Hb_001096_130

Information

Type -
Description -
Location Contig1096: 213689-216219
Sequence    

Annotation

kegg
ID rcu:RCOM_1329400
description protein with unknown function
nr
ID XP_012079719.1
description PREDICTED: RING-H2 finger protein ATL7-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SN28
description RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1
trembl
ID B9S6Y0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1329400 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02867: 212810-213763 , PASA_asmbl_02868: 213878-216007 , PASA_asmbl_02869: 216115-216489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001096_130 0.0 - - PREDICTED: RING-H2 finger protein ATL7-like isoform X1 [Jatropha curcas]
2 Hb_000962_070 0.1440750087 - - PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_002182_020 0.1528042259 - - Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_008566_040 0.1552152409 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
5 Hb_000096_190 0.1592801309 - - unknown [Lotus japonicus]
6 Hb_000181_350 0.1636594041 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
7 Hb_007101_110 0.169022088 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
8 Hb_000049_160 0.1794615625 - - tyrosine decarboxylase family protein [Populus trichocarpa]
9 Hb_001004_080 0.1801034562 - - hypothetical protein POPTR_0014s14130g [Populus trichocarpa]
10 Hb_005496_020 0.1802425651 - - PREDICTED: uncharacterized protein LOC105630867 [Jatropha curcas]
11 Hb_000765_060 0.1805602037 - - Alcohol dehydrogenase-like 6 [Glycine soja]
12 Hb_031527_110 0.1836932525 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
13 Hb_005914_050 0.1844352357 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
14 Hb_000057_110 0.1854104077 - - PREDICTED: kinesin-13A [Jatropha curcas]
15 Hb_007304_030 0.1856858923 - - PREDICTED: uncharacterized protein LOC105635926 isoform X2 [Jatropha curcas]
16 Hb_083380_020 0.1866701461 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
17 Hb_000086_210 0.1883540282 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000291_290 0.1904137414 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012339_010 0.1904288892 - - conserved hypothetical protein [Ricinus communis]
20 Hb_084230_010 0.1910749762 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_001096_130 Hb_001096_130 Hb_000962_070 Hb_000962_070 Hb_001096_130--Hb_000962_070 Hb_002182_020 Hb_002182_020 Hb_001096_130--Hb_002182_020 Hb_008566_040 Hb_008566_040 Hb_001096_130--Hb_008566_040 Hb_000096_190 Hb_000096_190 Hb_001096_130--Hb_000096_190 Hb_000181_350 Hb_000181_350 Hb_001096_130--Hb_000181_350 Hb_007101_110 Hb_007101_110 Hb_001096_130--Hb_007101_110 Hb_000962_070--Hb_000096_190 Hb_042083_040 Hb_042083_040 Hb_000962_070--Hb_042083_040 Hb_000796_150 Hb_000796_150 Hb_000962_070--Hb_000796_150 Hb_000638_070 Hb_000638_070 Hb_000962_070--Hb_000638_070 Hb_000962_070--Hb_000181_350 Hb_000057_110 Hb_000057_110 Hb_000962_070--Hb_000057_110 Hb_002182_020--Hb_000096_190 Hb_002759_120 Hb_002759_120 Hb_002182_020--Hb_002759_120 Hb_000749_020 Hb_000749_020 Hb_002182_020--Hb_000749_020 Hb_000049_160 Hb_000049_160 Hb_002182_020--Hb_000049_160 Hb_000086_210 Hb_000086_210 Hb_002182_020--Hb_000086_210 Hb_005563_010 Hb_005563_010 Hb_002182_020--Hb_005563_010 Hb_000765_060 Hb_000765_060 Hb_008566_040--Hb_000765_060 Hb_003935_060 Hb_003935_060 Hb_008566_040--Hb_003935_060 Hb_000684_260 Hb_000684_260 Hb_008566_040--Hb_000684_260 Hb_000173_060 Hb_000173_060 Hb_008566_040--Hb_000173_060 Hb_002960_150 Hb_002960_150 Hb_008566_040--Hb_002960_150 Hb_000622_350 Hb_000622_350 Hb_008566_040--Hb_000622_350 Hb_000049_180 Hb_000049_180 Hb_000096_190--Hb_000049_180 Hb_000096_190--Hb_002759_120 Hb_000096_190--Hb_042083_040 Hb_000096_190--Hb_000049_160 Hb_001663_040 Hb_001663_040 Hb_000181_350--Hb_001663_040 Hb_000181_350--Hb_007101_110 Hb_000181_350--Hb_000057_110 Hb_000200_300 Hb_000200_300 Hb_000181_350--Hb_000200_300 Hb_000684_030 Hb_000684_030 Hb_000181_350--Hb_000684_030 Hb_000062_330 Hb_000062_330 Hb_000181_350--Hb_000062_330 Hb_000365_130 Hb_000365_130 Hb_007101_110--Hb_000365_130 Hb_004965_110 Hb_004965_110 Hb_007101_110--Hb_004965_110 Hb_083380_020 Hb_083380_020 Hb_007101_110--Hb_083380_020 Hb_007101_110--Hb_000062_330 Hb_002184_090 Hb_002184_090 Hb_007101_110--Hb_002184_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.187387 0.100025 3.62824 4.41716 0.676881 0.687093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30387 1.295 0.584947 0.436998 2.05537

CAGE analysis