Hb_000541_020

Information

Type -
Description -
Location Contig541: 19181-19751
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000541_020 0.0 - - -
2 Hb_004041_090 0.0957689231 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000011_480 0.2074812352 - - zinc finger protein, putative [Ricinus communis]
4 Hb_003010_040 0.2393326533 - - hypothetical protein AALP_AA7G248200 [Arabis alpina]
5 Hb_059379_020 0.2464233488 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
6 Hb_014113_010 0.2465123838 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
7 Hb_003085_050 0.2502901874 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
8 Hb_157122_010 0.2503516524 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
9 Hb_002766_040 0.2580795222 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
10 Hb_000243_110 0.2585201255 - - PREDICTED: WAT1-related protein At3g53210-like [Jatropha curcas]
11 Hb_001687_050 0.260195516 - - -
12 Hb_084495_010 0.2627327486 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Eucalyptus grandis]
13 Hb_099198_010 0.2627998845 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 isoform X2 [Nicotiana tomentosiformis]
14 Hb_183700_010 0.2659111659 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_001652_050 0.2662683375 - - -
16 Hb_007735_010 0.2677649013 - - Gibberellin 20 oxidase, putative [Ricinus communis]
17 Hb_002553_080 0.2698650437 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096-like [Eucalyptus grandis]
18 Hb_002157_180 0.2707008625 - - separase, putative [Ricinus communis]
19 Hb_003581_240 0.2707943901 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
20 Hb_006054_020 0.2717195009 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000541_020 Hb_000541_020 Hb_004041_090 Hb_004041_090 Hb_000541_020--Hb_004041_090 Hb_000011_480 Hb_000011_480 Hb_000541_020--Hb_000011_480 Hb_003010_040 Hb_003010_040 Hb_000541_020--Hb_003010_040 Hb_059379_020 Hb_059379_020 Hb_000541_020--Hb_059379_020 Hb_014113_010 Hb_014113_010 Hb_000541_020--Hb_014113_010 Hb_003085_050 Hb_003085_050 Hb_000541_020--Hb_003085_050 Hb_004041_090--Hb_003085_050 Hb_002766_040 Hb_002766_040 Hb_004041_090--Hb_002766_040 Hb_157122_010 Hb_157122_010 Hb_004041_090--Hb_157122_010 Hb_002553_080 Hb_002553_080 Hb_004041_090--Hb_002553_080 Hb_004041_090--Hb_003010_040 Hb_000243_110 Hb_000243_110 Hb_000011_480--Hb_000243_110 Hb_000011_480--Hb_059379_020 Hb_000011_480--Hb_004041_090 Hb_006054_020 Hb_006054_020 Hb_000011_480--Hb_006054_020 Hb_022250_120 Hb_022250_120 Hb_000011_480--Hb_022250_120 Hb_000813_120 Hb_000813_120 Hb_003010_040--Hb_000813_120 Hb_183700_010 Hb_183700_010 Hb_003010_040--Hb_183700_010 Hb_000640_270 Hb_000640_270 Hb_003010_040--Hb_000640_270 Hb_117464_010 Hb_117464_010 Hb_003010_040--Hb_117464_010 Hb_039342_030 Hb_039342_030 Hb_003010_040--Hb_039342_030 Hb_008160_020 Hb_008160_020 Hb_003010_040--Hb_008160_020 Hb_002027_310 Hb_002027_310 Hb_059379_020--Hb_002027_310 Hb_013652_010 Hb_013652_010 Hb_059379_020--Hb_013652_010 Hb_002376_030 Hb_002376_030 Hb_059379_020--Hb_002376_030 Hb_009230_040 Hb_009230_040 Hb_059379_020--Hb_009230_040 Hb_002498_040 Hb_002498_040 Hb_059379_020--Hb_002498_040 Hb_002374_110 Hb_002374_110 Hb_059379_020--Hb_002374_110 Hb_084495_010 Hb_084495_010 Hb_014113_010--Hb_084495_010 Hb_099198_010 Hb_099198_010 Hb_014113_010--Hb_099198_010 Hb_003121_020 Hb_003121_020 Hb_014113_010--Hb_003121_020 Hb_014113_010--Hb_183700_010 Hb_014113_010--Hb_002766_040 Hb_003581_240 Hb_003581_240 Hb_014113_010--Hb_003581_240 Hb_003085_050--Hb_157122_010 Hb_003085_050--Hb_002553_080 Hb_003085_050--Hb_002766_040 Hb_002157_180 Hb_002157_180 Hb_003085_050--Hb_002157_180 Hb_007735_010 Hb_007735_010 Hb_003085_050--Hb_007735_010 Hb_003085_050--Hb_014113_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0933171 0.0379354 0 0 0.0443396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.224794 0

CAGE analysis