Hb_004041_090

Information

Type -
Description -
Location Contig4041: 90393-91196
Sequence    

Annotation

kegg
ID rcu:RCOM_0714460
description hypothetical protein
nr
ID XP_002529714.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SUP5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0714460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004041_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000541_020 0.0957689231 - - -
3 Hb_003085_050 0.1923730109 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
4 Hb_002766_040 0.1936082469 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
5 Hb_157122_010 0.1944777383 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
6 Hb_002553_080 0.1949428069 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096-like [Eucalyptus grandis]
7 Hb_003010_040 0.2002993819 - - hypothetical protein AALP_AA7G248200 [Arabis alpina]
8 Hb_007735_010 0.2014853063 - - Gibberellin 20 oxidase, putative [Ricinus communis]
9 Hb_001687_050 0.2038878915 - - -
10 Hb_014113_010 0.2143699804 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
11 Hb_183700_010 0.2198651722 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_001073_020 0.2232684589 - - hypothetical protein CISIN_1g031854mg [Citrus sinensis]
13 Hb_008225_100 0.2260747041 - - -
14 Hb_001596_040 0.227564201 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
15 Hb_005550_070 0.2288695032 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]
16 Hb_000556_200 0.2305559719 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
17 Hb_008020_010 0.2310052149 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]
18 Hb_004931_060 0.2325220541 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
19 Hb_008643_150 0.2339187897 - - hypothetical protein CISIN_1g0034652mg, partial [Citrus sinensis]
20 Hb_002157_180 0.2345381006 - - separase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004041_090 Hb_004041_090 Hb_000541_020 Hb_000541_020 Hb_004041_090--Hb_000541_020 Hb_003085_050 Hb_003085_050 Hb_004041_090--Hb_003085_050 Hb_002766_040 Hb_002766_040 Hb_004041_090--Hb_002766_040 Hb_157122_010 Hb_157122_010 Hb_004041_090--Hb_157122_010 Hb_002553_080 Hb_002553_080 Hb_004041_090--Hb_002553_080 Hb_003010_040 Hb_003010_040 Hb_004041_090--Hb_003010_040 Hb_000011_480 Hb_000011_480 Hb_000541_020--Hb_000011_480 Hb_000541_020--Hb_003010_040 Hb_059379_020 Hb_059379_020 Hb_000541_020--Hb_059379_020 Hb_014113_010 Hb_014113_010 Hb_000541_020--Hb_014113_010 Hb_000541_020--Hb_003085_050 Hb_003085_050--Hb_157122_010 Hb_003085_050--Hb_002553_080 Hb_003085_050--Hb_002766_040 Hb_002157_180 Hb_002157_180 Hb_003085_050--Hb_002157_180 Hb_007735_010 Hb_007735_010 Hb_003085_050--Hb_007735_010 Hb_003085_050--Hb_014113_010 Hb_002766_040--Hb_007735_010 Hb_002766_040--Hb_002553_080 Hb_183700_010 Hb_183700_010 Hb_002766_040--Hb_183700_010 Hb_002766_040--Hb_014113_010 Hb_002766_040--Hb_157122_010 Hb_157122_010--Hb_002553_080 Hb_157122_010--Hb_002157_180 Hb_157122_010--Hb_014113_010 Hb_157122_010--Hb_007735_010 Hb_002553_080--Hb_007735_010 Hb_001168_080 Hb_001168_080 Hb_002553_080--Hb_001168_080 Hb_005550_070 Hb_005550_070 Hb_002553_080--Hb_005550_070 Hb_000813_120 Hb_000813_120 Hb_003010_040--Hb_000813_120 Hb_003010_040--Hb_183700_010 Hb_000640_270 Hb_000640_270 Hb_003010_040--Hb_000640_270 Hb_117464_010 Hb_117464_010 Hb_003010_040--Hb_117464_010 Hb_039342_030 Hb_039342_030 Hb_003010_040--Hb_039342_030 Hb_008160_020 Hb_008160_020 Hb_003010_040--Hb_008160_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.112691 0.023246 0 0 0.025766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.213333 0

CAGE analysis