Hb_022250_120

Information

Type -
Description -
Location Contig22250: 86372-91403
Sequence    

Annotation

kegg
ID cit:102616607
description glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial-like
nr
ID XP_012090545.1
description PREDICTED: uncharacterized protein LOC105648689 [Jatropha curcas]
swissprot
ID B2V855
description Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=gatA PE=3 SV=1
trembl
ID A0A067JF24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26342 PE=4 SV=1
Gene Ontology
ID GO:0005622
description glutamyl-trna amidotransferase subunit a isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23037: 86270-88259
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022250_120 0.0 - - PREDICTED: uncharacterized protein LOC105648689 [Jatropha curcas]
2 Hb_000958_030 0.2485970495 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_000097_040 0.2561953472 transcription factor TF Family: MYB myb domain protein [Hevea brasiliensis]
4 Hb_002325_020 0.259899158 - - zinc finger protein, putative [Ricinus communis]
5 Hb_003428_100 0.2621757971 - - Polygalacturonase precursor, putative [Ricinus communis]
6 Hb_000025_020 0.2636351066 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
7 Hb_002046_100 0.264531946 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
8 Hb_000011_480 0.2711913927 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000243_110 0.2713634765 - - PREDICTED: WAT1-related protein At3g53210-like [Jatropha curcas]
10 Hb_156144_040 0.274240712 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
11 Hb_031042_030 0.2774634244 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
12 Hb_000556_110 0.2781449894 - - hypothetical protein POPTR_0014s06790g [Populus trichocarpa]
13 Hb_034585_020 0.2840983739 - - -
14 Hb_005144_020 0.2892390215 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
15 Hb_000230_100 0.2897894445 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000556_140 0.2907290078 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 9 [Jatropha curcas]
17 Hb_000204_030 0.2917280541 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
18 Hb_004445_090 0.2955300733 - - conserved hypothetical protein [Ricinus communis]
19 Hb_059379_020 0.2969917646 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
20 Hb_000057_160 0.2974868406 - - hypothetical protein JCGZ_06279 [Jatropha curcas]

Gene co-expression network

sample Hb_022250_120 Hb_022250_120 Hb_000958_030 Hb_000958_030 Hb_022250_120--Hb_000958_030 Hb_000097_040 Hb_000097_040 Hb_022250_120--Hb_000097_040 Hb_002325_020 Hb_002325_020 Hb_022250_120--Hb_002325_020 Hb_003428_100 Hb_003428_100 Hb_022250_120--Hb_003428_100 Hb_000025_020 Hb_000025_020 Hb_022250_120--Hb_000025_020 Hb_002046_100 Hb_002046_100 Hb_022250_120--Hb_002046_100 Hb_006588_030 Hb_006588_030 Hb_000958_030--Hb_006588_030 Hb_002072_020 Hb_002072_020 Hb_000958_030--Hb_002072_020 Hb_000077_330 Hb_000077_330 Hb_000958_030--Hb_000077_330 Hb_000976_440 Hb_000976_440 Hb_000958_030--Hb_000976_440 Hb_018591_050 Hb_018591_050 Hb_000958_030--Hb_018591_050 Hb_032050_050 Hb_032050_050 Hb_000958_030--Hb_032050_050 Hb_002903_130 Hb_002903_130 Hb_000097_040--Hb_002903_130 Hb_000977_010 Hb_000977_010 Hb_000097_040--Hb_000977_010 Hb_011618_040 Hb_011618_040 Hb_000097_040--Hb_011618_040 Hb_000556_110 Hb_000556_110 Hb_000097_040--Hb_000556_110 Hb_003640_030 Hb_003640_030 Hb_000097_040--Hb_003640_030 Hb_001946_150 Hb_001946_150 Hb_000097_040--Hb_001946_150 Hb_003071_060 Hb_003071_060 Hb_002325_020--Hb_003071_060 Hb_000010_120 Hb_000010_120 Hb_002325_020--Hb_000010_120 Hb_006478_180 Hb_006478_180 Hb_002325_020--Hb_006478_180 Hb_002325_020--Hb_000025_020 Hb_002325_020--Hb_003428_100 Hb_011382_030 Hb_011382_030 Hb_002325_020--Hb_011382_030 Hb_000204_030 Hb_000204_030 Hb_003428_100--Hb_000204_030 Hb_029510_110 Hb_029510_110 Hb_003428_100--Hb_029510_110 Hb_001104_200 Hb_001104_200 Hb_003428_100--Hb_001104_200 Hb_003428_100--Hb_002046_100 Hb_004143_120 Hb_004143_120 Hb_003428_100--Hb_004143_120 Hb_005539_160 Hb_005539_160 Hb_000025_020--Hb_005539_160 Hb_000025_020--Hb_000010_120 Hb_000025_020--Hb_000556_110 Hb_000025_020--Hb_003071_060 Hb_000025_020--Hb_006478_180 Hb_002046_100--Hb_000204_030 Hb_000245_140 Hb_000245_140 Hb_002046_100--Hb_000245_140 Hb_000563_610 Hb_000563_610 Hb_002046_100--Hb_000563_610 Hb_004445_090 Hb_004445_090 Hb_002046_100--Hb_004445_090 Hb_001168_010 Hb_001168_010 Hb_002046_100--Hb_001168_010 Hb_000648_120 Hb_000648_120 Hb_002046_100--Hb_000648_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.114801 0.315611 0.299433 0.0316438 0.29789 0.10963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.91703 0.118198

CAGE analysis