Hb_000298_080

Information

Type -
Description -
Location Contig298: 199246-200209
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000298_080 0.0 - - -
2 Hb_000014_130 0.2454350773 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
3 Hb_000059_090 0.2565306592 - - -
4 Hb_004650_090 0.2642964684 - - -
5 Hb_000295_090 0.2682089439 - - Clathrin light chain 2 [Glycine soja]
6 Hb_000523_100 0.2754082282 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
7 Hb_002904_090 0.2773507071 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420-like [Vitis vinifera]
8 Hb_126112_010 0.2811346805 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
9 Hb_002194_070 0.2854381561 - - -
10 Hb_002249_110 0.2881226059 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
11 Hb_000003_180 0.2888820433 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004317_050 0.2897753133 - - -
13 Hb_007904_190 0.290712654 - - -
14 Hb_000808_240 0.3062238584 - - -
15 Hb_071923_010 0.3064587847 - - -
16 Hb_001300_050 0.3081129348 - - -
17 Hb_088065_010 0.3103098532 - - hypothetical protein glysoja_007934 [Glycine soja]
18 Hb_001544_020 0.3107543864 - - -
19 Hb_005222_010 0.3117525528 - - hypothetical protein MTR_1g033950 [Medicago truncatula]
20 Hb_007021_030 0.3126305754 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000298_080 Hb_000298_080 Hb_000014_130 Hb_000014_130 Hb_000298_080--Hb_000014_130 Hb_000059_090 Hb_000059_090 Hb_000298_080--Hb_000059_090 Hb_004650_090 Hb_004650_090 Hb_000298_080--Hb_004650_090 Hb_000295_090 Hb_000295_090 Hb_000298_080--Hb_000295_090 Hb_000523_100 Hb_000523_100 Hb_000298_080--Hb_000523_100 Hb_002904_090 Hb_002904_090 Hb_000298_080--Hb_002904_090 Hb_041237_010 Hb_041237_010 Hb_000014_130--Hb_041237_010 Hb_007978_020 Hb_007978_020 Hb_000014_130--Hb_007978_020 Hb_003772_020 Hb_003772_020 Hb_000014_130--Hb_003772_020 Hb_000014_130--Hb_002904_090 Hb_032018_010 Hb_032018_010 Hb_000014_130--Hb_032018_010 Hb_003398_010 Hb_003398_010 Hb_000014_130--Hb_003398_010 Hb_000059_090--Hb_000295_090 Hb_056531_040 Hb_056531_040 Hb_000059_090--Hb_056531_040 Hb_000707_070 Hb_000707_070 Hb_000059_090--Hb_000707_070 Hb_001235_060 Hb_001235_060 Hb_000059_090--Hb_001235_060 Hb_115578_010 Hb_115578_010 Hb_000059_090--Hb_115578_010 Hb_086287_020 Hb_086287_020 Hb_000059_090--Hb_086287_020 Hb_000580_040 Hb_000580_040 Hb_004650_090--Hb_000580_040 Hb_005715_020 Hb_005715_020 Hb_004650_090--Hb_005715_020 Hb_000062_500 Hb_000062_500 Hb_004650_090--Hb_000062_500 Hb_007545_160 Hb_007545_160 Hb_004650_090--Hb_007545_160 Hb_043950_010 Hb_043950_010 Hb_004650_090--Hb_043950_010 Hb_173423_010 Hb_173423_010 Hb_004650_090--Hb_173423_010 Hb_002249_110 Hb_002249_110 Hb_000295_090--Hb_002249_110 Hb_000295_090--Hb_115578_010 Hb_130134_020 Hb_130134_020 Hb_000295_090--Hb_130134_020 Hb_088774_010 Hb_088774_010 Hb_000295_090--Hb_088774_010 Hb_001385_090 Hb_001385_090 Hb_000295_090--Hb_001385_090 Hb_000295_090--Hb_000523_100 Hb_088065_010 Hb_088065_010 Hb_000523_100--Hb_088065_010 Hb_126112_010 Hb_126112_010 Hb_000523_100--Hb_126112_010 Hb_000523_100--Hb_088774_010 Hb_000003_180 Hb_000003_180 Hb_000523_100--Hb_000003_180 Hb_071923_010 Hb_071923_010 Hb_000523_100--Hb_071923_010 Hb_019282_010 Hb_019282_010 Hb_002904_090--Hb_019282_010 Hb_001427_180 Hb_001427_180 Hb_002904_090--Hb_001427_180 Hb_176117_010 Hb_176117_010 Hb_002904_090--Hb_176117_010 Hb_000331_500 Hb_000331_500 Hb_002904_090--Hb_000331_500 Hb_002904_090--Hb_041237_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.862302 1.40682 0.282348 0 0.328398 6.8032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.380687 0.599828 0 0 0

CAGE analysis