Hb_000227_340

Information

Type -
Description -
Location Contig227: 292269-298308
Sequence    

Annotation

kegg
ID rcu:RCOM_0914010
description chloride channel clc, putative
nr
ID XP_002517213.1
description chloride channel clc, putative [Ricinus communis]
swissprot
ID P92943
description Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2
trembl
ID B9RTZ4
description Chloride channel protein OS=Ricinus communis GN=RCOM_0914010 PE=3 SV=1
Gene Ontology
ID GO:0016020
description chloride channel protein clc-d isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_340 0.0 - - chloride channel clc, putative [Ricinus communis]
2 Hb_000466_070 0.2232051153 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
3 Hb_002928_020 0.2240935785 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
4 Hb_000414_140 0.2319760106 - - Chalcone synthase, putative [Ricinus communis]
5 Hb_002943_010 0.237199252 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
6 Hb_011861_030 0.2542195875 desease resistance Gene Name: NB-ARC putative disease resistance protein [Morus notabilis]
7 Hb_000078_090 0.2619195702 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
8 Hb_000834_050 0.2625794022 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
9 Hb_001459_090 0.2633942111 - - unnamed protein product [Vitis vinifera]
10 Hb_000117_140 0.2667314471 - - hypothetical protein CISIN_1g042884mg, partial [Citrus sinensis]
11 Hb_001817_120 0.2676007944 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Fragaria vesca subsp. vesca]
12 Hb_027337_060 0.2676968673 - - -
13 Hb_004032_490 0.2681958299 - - PREDICTED: uncharacterized protein LOC100853401 [Vitis vinifera]
14 Hb_006634_100 0.2726835037 - - conserved hypothetical protein [Ricinus communis]
15 Hb_113673_010 0.2730067283 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
16 Hb_001675_100 0.2799419897 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000402_090 0.2818484761 - - Lipase [Glycine soja]
18 Hb_005235_040 0.2822375846 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
19 Hb_021576_120 0.2852255947 - - DNA-directed RNA polymerase subunit, putative [Ricinus communis]
20 Hb_007894_180 0.2888357201 - - PREDICTED: cytochrome P450 716B1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000227_340 Hb_000227_340 Hb_000466_070 Hb_000466_070 Hb_000227_340--Hb_000466_070 Hb_002928_020 Hb_002928_020 Hb_000227_340--Hb_002928_020 Hb_000414_140 Hb_000414_140 Hb_000227_340--Hb_000414_140 Hb_002943_010 Hb_002943_010 Hb_000227_340--Hb_002943_010 Hb_011861_030 Hb_011861_030 Hb_000227_340--Hb_011861_030 Hb_000078_090 Hb_000078_090 Hb_000227_340--Hb_000078_090 Hb_000466_070--Hb_002928_020 Hb_003582_090 Hb_003582_090 Hb_000466_070--Hb_003582_090 Hb_000466_070--Hb_000414_140 Hb_000445_370 Hb_000445_370 Hb_000466_070--Hb_000445_370 Hb_017098_040 Hb_017098_040 Hb_000466_070--Hb_017098_040 Hb_001195_660 Hb_001195_660 Hb_000466_070--Hb_001195_660 Hb_009541_010 Hb_009541_010 Hb_002928_020--Hb_009541_010 Hb_001817_120 Hb_001817_120 Hb_002928_020--Hb_001817_120 Hb_002928_020--Hb_002943_010 Hb_012760_090 Hb_012760_090 Hb_002928_020--Hb_012760_090 Hb_000254_010 Hb_000254_010 Hb_002928_020--Hb_000254_010 Hb_000414_140--Hb_009541_010 Hb_000414_140--Hb_002928_020 Hb_000414_140--Hb_001817_120 Hb_002909_080 Hb_002909_080 Hb_000414_140--Hb_002909_080 Hb_000414_140--Hb_002943_010 Hb_000340_220 Hb_000340_220 Hb_002943_010--Hb_000340_220 Hb_000066_040 Hb_000066_040 Hb_002943_010--Hb_000066_040 Hb_002603_010 Hb_002603_010 Hb_002943_010--Hb_002603_010 Hb_013399_090 Hb_013399_090 Hb_002943_010--Hb_013399_090 Hb_000404_040 Hb_000404_040 Hb_002943_010--Hb_000404_040 Hb_002301_110 Hb_002301_110 Hb_011861_030--Hb_002301_110 Hb_002072_040 Hb_002072_040 Hb_011861_030--Hb_002072_040 Hb_008695_150 Hb_008695_150 Hb_011861_030--Hb_008695_150 Hb_000028_490 Hb_000028_490 Hb_011861_030--Hb_000028_490 Hb_008790_040 Hb_008790_040 Hb_011861_030--Hb_008790_040 Hb_005333_080 Hb_005333_080 Hb_011861_030--Hb_005333_080 Hb_000094_040 Hb_000094_040 Hb_000078_090--Hb_000094_040 Hb_113673_010 Hb_113673_010 Hb_000078_090--Hb_113673_010 Hb_010366_010 Hb_010366_010 Hb_000078_090--Hb_010366_010 Hb_001565_060 Hb_001565_060 Hb_000078_090--Hb_001565_060 Hb_001393_010 Hb_001393_010 Hb_000078_090--Hb_001393_010 Hb_000094_080 Hb_000094_080 Hb_000078_090--Hb_000094_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0861113 0.133093 0.103545 0.0878084 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0572769 0.0657597 0.095782

CAGE analysis