Hb_000059_350

Information

Type -
Description -
Location Contig59: 312395-316688
Sequence    

Annotation

kegg
ID rcu:RCOM_1502760
description glutamate dehydrogenase, putative (EC:1.4.1.3)
nr
ID XP_002511037.1
description glutamate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q38946
description Glutamate dehydrogenase 2 OS=Arabidopsis thaliana GN=GDH2 PE=1 SV=1
trembl
ID B9RA12
description Glutamate dehydrogenase OS=Ricinus communis GN=RCOM_1502760 PE=3 SV=1
Gene Ontology
ID GO:0005774
description glutamate dehydrogenase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50184: 313148-316797 , PASA_asmbl_50185: 313739-314132
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_350 0.0 - - glutamate dehydrogenase, putative [Ricinus communis]
2 Hb_001102_250 0.1350724293 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
3 Hb_012395_210 0.1405589045 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003095_070 0.1481186285 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
5 Hb_006351_110 0.1548668656 - - -
6 Hb_000103_550 0.1586315346 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
7 Hb_010594_030 0.1624459186 - - -
8 Hb_005211_070 0.1644791362 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
9 Hb_003211_050 0.1694562728 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
10 Hb_008705_090 0.1752947679 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2-like [Jatropha curcas]
11 Hb_004297_040 0.1756357608 - - acyl CoA reductase [Hevea brasiliensis]
12 Hb_004635_060 0.1768535999 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
13 Hb_009838_040 0.1771589969 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
14 Hb_000318_490 0.1799462746 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
15 Hb_072912_020 0.1803687269 - - abhydrolase domain containing, putative [Ricinus communis]
16 Hb_001276_060 0.180651225 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
17 Hb_001258_140 0.1824246942 - - -
18 Hb_005841_040 0.1827417386 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
19 Hb_000387_060 0.183251422 - - -
20 Hb_168711_010 0.1832658314 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 [Sesamum indicum]

Gene co-expression network

sample Hb_000059_350 Hb_000059_350 Hb_001102_250 Hb_001102_250 Hb_000059_350--Hb_001102_250 Hb_012395_210 Hb_012395_210 Hb_000059_350--Hb_012395_210 Hb_003095_070 Hb_003095_070 Hb_000059_350--Hb_003095_070 Hb_006351_110 Hb_006351_110 Hb_000059_350--Hb_006351_110 Hb_000103_550 Hb_000103_550 Hb_000059_350--Hb_000103_550 Hb_010594_030 Hb_010594_030 Hb_000059_350--Hb_010594_030 Hb_072912_020 Hb_072912_020 Hb_001102_250--Hb_072912_020 Hb_001102_250--Hb_003095_070 Hb_000544_110 Hb_000544_110 Hb_001102_250--Hb_000544_110 Hb_005841_040 Hb_005841_040 Hb_001102_250--Hb_005841_040 Hb_005137_020 Hb_005137_020 Hb_001102_250--Hb_005137_020 Hb_004297_040 Hb_004297_040 Hb_001102_250--Hb_004297_040 Hb_012395_210--Hb_004297_040 Hb_000078_010 Hb_000078_010 Hb_012395_210--Hb_000078_010 Hb_001213_120 Hb_001213_120 Hb_012395_210--Hb_001213_120 Hb_000367_280 Hb_000367_280 Hb_012395_210--Hb_000367_280 Hb_012395_210--Hb_001102_250 Hb_005539_210 Hb_005539_210 Hb_012395_210--Hb_005539_210 Hb_001276_060 Hb_001276_060 Hb_003095_070--Hb_001276_060 Hb_000788_080 Hb_000788_080 Hb_003095_070--Hb_000788_080 Hb_005908_040 Hb_005908_040 Hb_003095_070--Hb_005908_040 Hb_011671_400 Hb_011671_400 Hb_003095_070--Hb_011671_400 Hb_003095_070--Hb_072912_020 Hb_010172_100 Hb_010172_100 Hb_006351_110--Hb_010172_100 Hb_004159_050 Hb_004159_050 Hb_006351_110--Hb_004159_050 Hb_006351_110--Hb_001102_250 Hb_006351_110--Hb_000103_550 Hb_000316_100 Hb_000316_100 Hb_006351_110--Hb_000316_100 Hb_006351_110--Hb_010594_030 Hb_000270_620 Hb_000270_620 Hb_000103_550--Hb_000270_620 Hb_000318_490 Hb_000318_490 Hb_000103_550--Hb_000318_490 Hb_001159_200 Hb_001159_200 Hb_000103_550--Hb_001159_200 Hb_000103_550--Hb_003095_070 Hb_001396_090 Hb_001396_090 Hb_000103_550--Hb_001396_090 Hb_034585_050 Hb_034585_050 Hb_010594_030--Hb_034585_050 Hb_010594_030--Hb_001102_250 Hb_002492_020 Hb_002492_020 Hb_010594_030--Hb_002492_020 Hb_005211_070 Hb_005211_070 Hb_010594_030--Hb_005211_070 Hb_010594_030--Hb_012395_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.69436 0.0476529 2.79781 0.202815 5.44778 3.85029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.8839 42.9003 21.5233 4.00075 0

CAGE analysis