Hb_000010_150

Information

Type -
Description -
Location Contig10: 213610-217877
Sequence    

Annotation

kegg
ID rcu:RCOM_1508170
description copine, putative
nr
ID XP_012079951.1
description PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Jatropha curcas]
swissprot
ID Q9LY87
description E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1
trembl
ID A0A067K4F0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11383 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_150 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Jatropha curcas]
2 Hb_002984_040 0.1347111368 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000501_110 0.1425215528 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Populus euphratica]
4 Hb_006294_030 0.1450844261 - - alcohol dehydrogenase, putative [Ricinus communis]
5 Hb_133151_010 0.1656578684 - - NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]
6 Hb_000471_030 0.1673861978 - - -
7 Hb_004703_010 0.172451983 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
8 Hb_003881_020 0.1729949356 - - PREDICTED: stellacyanin-like [Jatropha curcas]
9 Hb_006262_030 0.1759917308 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_006925_060 0.1801873508 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
11 Hb_001634_030 0.1820412872 - - Receptor like protein 1, putative [Theobroma cacao]
12 Hb_000001_010 0.1823705487 - - PREDICTED: uncharacterized protein LOC105648961 [Jatropha curcas]
13 Hb_001918_030 0.1850996498 - - -
14 Hb_008080_030 0.1880285444 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
15 Hb_004316_160 0.1908282509 - - hypothetical protein CISIN_1g047906mg, partial [Citrus sinensis]
16 Hb_006681_030 0.1921884733 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Populus euphratica]
17 Hb_007676_040 0.1953724512 - - cellulose synthase, putative [Ricinus communis]
18 Hb_001832_240 0.1966665121 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
19 Hb_137272_010 0.1983695921 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
20 Hb_042098_010 0.1988434432 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]

Gene co-expression network

sample Hb_000010_150 Hb_000010_150 Hb_002984_040 Hb_002984_040 Hb_000010_150--Hb_002984_040 Hb_000501_110 Hb_000501_110 Hb_000010_150--Hb_000501_110 Hb_006294_030 Hb_006294_030 Hb_000010_150--Hb_006294_030 Hb_133151_010 Hb_133151_010 Hb_000010_150--Hb_133151_010 Hb_000471_030 Hb_000471_030 Hb_000010_150--Hb_000471_030 Hb_004703_010 Hb_004703_010 Hb_000010_150--Hb_004703_010 Hb_002984_040--Hb_000501_110 Hb_003881_020 Hb_003881_020 Hb_002984_040--Hb_003881_020 Hb_007676_040 Hb_007676_040 Hb_002984_040--Hb_007676_040 Hb_134174_010 Hb_134174_010 Hb_002984_040--Hb_134174_010 Hb_123560_020 Hb_123560_020 Hb_002984_040--Hb_123560_020 Hb_002984_040--Hb_006294_030 Hb_000501_110--Hb_007676_040 Hb_000501_110--Hb_003881_020 Hb_083412_010 Hb_083412_010 Hb_000501_110--Hb_083412_010 Hb_005542_040 Hb_005542_040 Hb_000501_110--Hb_005542_040 Hb_039022_020 Hb_039022_020 Hb_000501_110--Hb_039022_020 Hb_006294_030--Hb_000471_030 Hb_012691_010 Hb_012691_010 Hb_006294_030--Hb_012691_010 Hb_001634_030 Hb_001634_030 Hb_006294_030--Hb_001634_030 Hb_005834_050 Hb_005834_050 Hb_006294_030--Hb_005834_050 Hb_068804_070 Hb_068804_070 Hb_006294_030--Hb_068804_070 Hb_133151_010--Hb_003881_020 Hb_133151_010--Hb_083412_010 Hb_000289_100 Hb_000289_100 Hb_133151_010--Hb_000289_100 Hb_005679_110 Hb_005679_110 Hb_133151_010--Hb_005679_110 Hb_137272_010 Hb_137272_010 Hb_133151_010--Hb_137272_010 Hb_133151_010--Hb_000501_110 Hb_000471_030--Hb_012691_010 Hb_004316_160 Hb_004316_160 Hb_000471_030--Hb_004316_160 Hb_000471_030--Hb_068804_070 Hb_005743_010 Hb_005743_010 Hb_000471_030--Hb_005743_010 Hb_000471_030--Hb_001634_030 Hb_001532_060 Hb_001532_060 Hb_004703_010--Hb_001532_060 Hb_006262_030 Hb_006262_030 Hb_004703_010--Hb_006262_030 Hb_008080_030 Hb_008080_030 Hb_004703_010--Hb_008080_030 Hb_003413_020 Hb_003413_020 Hb_004703_010--Hb_003413_020 Hb_002110_060 Hb_002110_060 Hb_004703_010--Hb_002110_060 Hb_002157_100 Hb_002157_100 Hb_004703_010--Hb_002157_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0185303 0.166507 0.415411 0.0450127 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.253681 0.0687909

CAGE analysis