Hb_173866_010

Information

Type -
Description -
Location Contig173866: 4096-4612
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16536: 4571-4979
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173866_010 0.0 - - -
2 Hb_106005_010 0.2215763827 - - EG5651 [Manihot esculenta]
3 Hb_002671_080 0.2361625577 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 [Jatropha curcas]
4 Hb_001976_050 0.2398244268 - - PREDICTED: protein SKIP34 [Jatropha curcas]
5 Hb_032225_020 0.2406479515 - - hypothetical protein POPTR_0006s08140g [Populus trichocarpa]
6 Hb_143947_010 0.2472960774 - - PREDICTED: deSI-like protein At4g17486 isoform X2 [Pyrus x bretschneideri]
7 Hb_000705_220 0.2513104556 - - unnamed protein product [Vitis vinifera]
8 Hb_005965_010 0.2529293125 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
9 Hb_002687_050 0.2557624166 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
10 Hb_120221_010 0.2563431033 - - -
11 Hb_121236_010 0.2569827592 - - geranyl-diphosphate synthase [Hevea brasiliensis]
12 Hb_008725_200 0.2576286073 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
13 Hb_001012_020 0.2578344307 transcription factor TF Family: M-type unnamed protein product [Coffea canephora]
14 Hb_000329_770 0.2605334159 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002027_330 0.2612722671 - - -
16 Hb_000127_090 0.2616954804 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001662_160 0.2619119144 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
18 Hb_002027_340 0.2619270937 - - -
19 Hb_123202_010 0.2619837022 - - thioredoxin h [Hevea brasiliensis]
20 Hb_000878_130 0.2632182107 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_173866_010 Hb_173866_010 Hb_106005_010 Hb_106005_010 Hb_173866_010--Hb_106005_010 Hb_002671_080 Hb_002671_080 Hb_173866_010--Hb_002671_080 Hb_001976_050 Hb_001976_050 Hb_173866_010--Hb_001976_050 Hb_032225_020 Hb_032225_020 Hb_173866_010--Hb_032225_020 Hb_143947_010 Hb_143947_010 Hb_173866_010--Hb_143947_010 Hb_000705_220 Hb_000705_220 Hb_173866_010--Hb_000705_220 Hb_000001_040 Hb_000001_040 Hb_106005_010--Hb_000001_040 Hb_005731_140 Hb_005731_140 Hb_106005_010--Hb_005731_140 Hb_005965_010 Hb_005965_010 Hb_106005_010--Hb_005965_010 Hb_002482_060 Hb_002482_060 Hb_106005_010--Hb_002482_060 Hb_007188_020 Hb_007188_020 Hb_106005_010--Hb_007188_020 Hb_136731_010 Hb_136731_010 Hb_106005_010--Hb_136731_010 Hb_102156_010 Hb_102156_010 Hb_002671_080--Hb_102156_010 Hb_023226_010 Hb_023226_010 Hb_002671_080--Hb_023226_010 Hb_001057_050 Hb_001057_050 Hb_002671_080--Hb_001057_050 Hb_000608_180 Hb_000608_180 Hb_002671_080--Hb_000608_180 Hb_002259_150 Hb_002259_150 Hb_002671_080--Hb_002259_150 Hb_015057_010 Hb_015057_010 Hb_002671_080--Hb_015057_010 Hb_155375_010 Hb_155375_010 Hb_001976_050--Hb_155375_010 Hb_000032_540 Hb_000032_540 Hb_001976_050--Hb_000032_540 Hb_001976_050--Hb_143947_010 Hb_000510_090 Hb_000510_090 Hb_001976_050--Hb_000510_090 Hb_001976_050--Hb_000705_220 Hb_002259_030 Hb_002259_030 Hb_001976_050--Hb_002259_030 Hb_032225_020--Hb_106005_010 Hb_168737_010 Hb_168737_010 Hb_032225_020--Hb_168737_010 Hb_088065_010 Hb_088065_010 Hb_032225_020--Hb_088065_010 Hb_003581_010 Hb_003581_010 Hb_032225_020--Hb_003581_010 Hb_073559_010 Hb_073559_010 Hb_032225_020--Hb_073559_010 Hb_000265_130 Hb_000265_130 Hb_032225_020--Hb_000265_130 Hb_001818_080 Hb_001818_080 Hb_143947_010--Hb_001818_080 Hb_000703_090 Hb_000703_090 Hb_143947_010--Hb_000703_090 Hb_003494_240 Hb_003494_240 Hb_143947_010--Hb_003494_240 Hb_010298_010 Hb_010298_010 Hb_143947_010--Hb_010298_010 Hb_000035_130 Hb_000035_130 Hb_143947_010--Hb_000035_130 Hb_020902_010 Hb_020902_010 Hb_000705_220--Hb_020902_010 Hb_005410_040 Hb_005410_040 Hb_000705_220--Hb_005410_040 Hb_000705_220--Hb_155375_010 Hb_005735_030 Hb_005735_030 Hb_000705_220--Hb_005735_030 Hb_000705_220--Hb_000032_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.527961 1.08119 0.149271 0.564671 0.876968 6.69769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.24771 2.29574 2.28061 0 0

CAGE analysis