Hb_127127_010

Information

Type -
Description -
Location Contig127127: 48-888
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127127_010 0.0 - - -
2 Hb_002200_050 0.2235586945 - - unknown [Lotus japonicus]
3 Hb_001998_140 0.229800269 - - -
4 Hb_026228_010 0.2397346875 - - conserved hypothetical protein [Ricinus communis]
5 Hb_025190_010 0.2450785398 - - conserved hypothetical protein [Ricinus communis]
6 Hb_025288_010 0.2454782744 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
7 Hb_000160_160 0.2498367709 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
8 Hb_002126_010 0.2520069265 - - predicted protein [Hordeum vulgare subsp. vulgare]
9 Hb_006274_040 0.2592817902 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
10 Hb_000586_030 0.2596797502 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
11 Hb_005694_020 0.2632480221 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
12 Hb_005679_070 0.2672989159 - - hypothetical protein M569_07741, partial [Genlisea aurea]
13 Hb_012627_020 0.2697717105 - - PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]
14 Hb_000329_560 0.2726105452 - - conserved hypothetical protein [Ricinus communis]
15 Hb_130367_010 0.2735570347 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
16 Hb_029142_020 0.2736300728 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
17 Hb_002815_050 0.2743623773 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
18 Hb_008447_030 0.2746105667 - - -
19 Hb_022891_010 0.27544094 - - chitinase-like protein [Hevea brasiliensis]
20 Hb_000125_020 0.2754434916 transcription factor TF Family: mTERF -

Gene co-expression network

sample Hb_127127_010 Hb_127127_010 Hb_002200_050 Hb_002200_050 Hb_127127_010--Hb_002200_050 Hb_001998_140 Hb_001998_140 Hb_127127_010--Hb_001998_140 Hb_026228_010 Hb_026228_010 Hb_127127_010--Hb_026228_010 Hb_025190_010 Hb_025190_010 Hb_127127_010--Hb_025190_010 Hb_025288_010 Hb_025288_010 Hb_127127_010--Hb_025288_010 Hb_000160_160 Hb_000160_160 Hb_127127_010--Hb_000160_160 Hb_002200_050--Hb_000160_160 Hb_003688_110 Hb_003688_110 Hb_002200_050--Hb_003688_110 Hb_002200_050--Hb_025190_010 Hb_008447_030 Hb_008447_030 Hb_002200_050--Hb_008447_030 Hb_002200_050--Hb_025288_010 Hb_004709_020 Hb_004709_020 Hb_002200_050--Hb_004709_020 Hb_006198_090 Hb_006198_090 Hb_001998_140--Hb_006198_090 Hb_005679_070 Hb_005679_070 Hb_001998_140--Hb_005679_070 Hb_007188_030 Hb_007188_030 Hb_001998_140--Hb_007188_030 Hb_002482_060 Hb_002482_060 Hb_001998_140--Hb_002482_060 Hb_001998_140--Hb_026228_010 Hb_010565_040 Hb_010565_040 Hb_001998_140--Hb_010565_040 Hb_000329_560 Hb_000329_560 Hb_026228_010--Hb_000329_560 Hb_026228_010--Hb_005679_070 Hb_026228_010--Hb_003688_110 Hb_026228_010--Hb_002200_050 Hb_000810_020 Hb_000810_020 Hb_026228_010--Hb_000810_020 Hb_025190_010--Hb_003688_110 Hb_002482_040 Hb_002482_040 Hb_025190_010--Hb_002482_040 Hb_000174_040 Hb_000174_040 Hb_025190_010--Hb_000174_040 Hb_025190_010--Hb_026228_010 Hb_029142_020 Hb_029142_020 Hb_025190_010--Hb_029142_020 Hb_132180_010 Hb_132180_010 Hb_025288_010--Hb_132180_010 Hb_002078_260 Hb_002078_260 Hb_025288_010--Hb_002078_260 Hb_011037_020 Hb_011037_020 Hb_025288_010--Hb_011037_020 Hb_029142_070 Hb_029142_070 Hb_025288_010--Hb_029142_070 Hb_030982_020 Hb_030982_020 Hb_025288_010--Hb_030982_020 Hb_011214_100 Hb_011214_100 Hb_025288_010--Hb_011214_100 Hb_000656_090 Hb_000656_090 Hb_000160_160--Hb_000656_090 Hb_012627_020 Hb_012627_020 Hb_000160_160--Hb_012627_020 Hb_000160_160--Hb_008447_030 Hb_000160_160--Hb_000329_560 Hb_000160_160--Hb_025190_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.229292 0 0.946879 0 1.31949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.206199 0.647876 0.25778 0.557182 0.565891

CAGE analysis