Hb_123051_010

Information

Type -
Description -
Location Contig123051: 7566-10924
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09880g
description hypothetical protein
nr
ID XP_011008183.1
description PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Populus euphratica]
swissprot
ID Q9SCX6
description Disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=1 SV=1
trembl
ID U5FG45
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09880g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123051_010 0.0 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Populus euphratica]
2 Hb_000384_030 0.2855617909 - - PREDICTED: uncharacterized protein LOC101310565 isoform X1 [Fragaria vesca subsp. vesca]
3 Hb_001247_200 0.2897558263 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
4 Hb_002239_040 0.2931531979 - - Cellular apoptosis susceptibility protein / importin-alpha re-exporter, putative isoform 1 [Theobroma cacao]
5 Hb_008725_150 0.3008724501 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
6 Hb_002131_040 0.303257734 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
7 Hb_002489_010 0.303979556 - - hypothetical protein JCGZ_17199 [Jatropha curcas]
8 Hb_011861_070 0.3087614894 - - F-box/LRR-repeat protein, putative [Ricinus communis]
9 Hb_002374_440 0.3097796945 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004767_090 0.3114609878 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
11 Hb_006816_170 0.3125983214 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
12 Hb_123051_020 0.3138619707 - - hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
13 Hb_004221_050 0.3138952894 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
14 Hb_001329_240 0.3152957276 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
15 Hb_003688_200 0.3190924548 - - conserved hypothetical protein [Ricinus communis]
16 Hb_155123_010 0.319576314 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
17 Hb_006846_090 0.3206107104 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
18 Hb_017711_020 0.3217243394 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
19 Hb_000389_180 0.3230794569 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
20 Hb_103494_010 0.3232869155 - - -

Gene co-expression network

sample Hb_123051_010 Hb_123051_010 Hb_000384_030 Hb_000384_030 Hb_123051_010--Hb_000384_030 Hb_001247_200 Hb_001247_200 Hb_123051_010--Hb_001247_200 Hb_002239_040 Hb_002239_040 Hb_123051_010--Hb_002239_040 Hb_008725_150 Hb_008725_150 Hb_123051_010--Hb_008725_150 Hb_002131_040 Hb_002131_040 Hb_123051_010--Hb_002131_040 Hb_002489_010 Hb_002489_010 Hb_123051_010--Hb_002489_010 Hb_000384_030--Hb_001247_200 Hb_001278_070 Hb_001278_070 Hb_000384_030--Hb_001278_070 Hb_058643_010 Hb_058643_010 Hb_000384_030--Hb_058643_010 Hb_002217_150 Hb_002217_150 Hb_000384_030--Hb_002217_150 Hb_006816_170 Hb_006816_170 Hb_000384_030--Hb_006816_170 Hb_009898_020 Hb_009898_020 Hb_000384_030--Hb_009898_020 Hb_001247_200--Hb_006816_170 Hb_000926_120 Hb_000926_120 Hb_001247_200--Hb_000926_120 Hb_001152_030 Hb_001152_030 Hb_001247_200--Hb_001152_030 Hb_000984_050 Hb_000984_050 Hb_001247_200--Hb_000984_050 Hb_001247_200--Hb_058643_010 Hb_000406_040 Hb_000406_040 Hb_002239_040--Hb_000406_040 Hb_003656_110 Hb_003656_110 Hb_002239_040--Hb_003656_110 Hb_003097_190 Hb_003097_190 Hb_002239_040--Hb_003097_190 Hb_002311_250 Hb_002311_250 Hb_002239_040--Hb_002311_250 Hb_002239_040--Hb_006816_170 Hb_000152_560 Hb_000152_560 Hb_002239_040--Hb_000152_560 Hb_004316_070 Hb_004316_070 Hb_008725_150--Hb_004316_070 Hb_106321_030 Hb_106321_030 Hb_008725_150--Hb_106321_030 Hb_004137_060 Hb_004137_060 Hb_008725_150--Hb_004137_060 Hb_000832_130 Hb_000832_130 Hb_008725_150--Hb_000832_130 Hb_004767_090 Hb_004767_090 Hb_008725_150--Hb_004767_090 Hb_008725_150--Hb_002239_040 Hb_002131_040--Hb_006816_170 Hb_024505_050 Hb_024505_050 Hb_002131_040--Hb_024505_050 Hb_001329_240 Hb_001329_240 Hb_002131_040--Hb_001329_240 Hb_002131_040--Hb_008725_150 Hb_002131_040--Hb_001247_200 Hb_002374_430 Hb_002374_430 Hb_002131_040--Hb_002374_430 Hb_002489_010--Hb_006816_170 Hb_002045_130 Hb_002045_130 Hb_002489_010--Hb_002045_130 Hb_002489_010--Hb_024505_050 Hb_000792_070 Hb_000792_070 Hb_002489_010--Hb_000792_070 Hb_004116_200 Hb_004116_200 Hb_002489_010--Hb_004116_200 Hb_003893_010 Hb_003893_010 Hb_002489_010--Hb_003893_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.101307 0 0.0464564 0.371463 0.182253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.145119 0.0228345 0.0860051 0.173032 0

CAGE analysis