Hb_083845_010

Information

Type -
Description -
Location Contig83845: 8739-10587
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09760g
description POPTRDRAFT_575255; hypothetical protein
nr
ID XP_002321645.1
description hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
swissprot
ID P24465
description Cytochrome P450 71A1 OS=Persea americana GN=CYP71A1 PE=1 SV=2
trembl
ID B9IF09
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s09760g PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 71a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083845_010 0.0 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
2 Hb_081282_010 0.1666324489 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
3 Hb_003789_020 0.1829762181 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
4 Hb_004607_010 0.1855851424 - - -
5 Hb_000248_090 0.1857450621 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
6 Hb_005656_110 0.1868150714 - - cytochrome P450, putative [Ricinus communis]
7 Hb_003938_220 0.1892240124 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
8 Hb_001357_370 0.1899520025 - - -
9 Hb_004968_110 0.191408944 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
10 Hb_000023_040 0.1918499473 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_161346_010 0.1925460152 - - PREDICTED: germin-like protein subfamily 1 member 20 [Populus euphratica]
12 Hb_007227_010 0.194519892 - - hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
13 Hb_005714_080 0.1958828317 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
14 Hb_002903_030 0.196389468 - - polyphenol oxidase [Cydonia oblonga]
15 Hb_052135_010 0.196459844 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
16 Hb_170365_010 0.1964927132 - - Retrotransposon protein, putative [Theobroma cacao]
17 Hb_183433_020 0.1966914086 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
18 Hb_181803_010 0.1970951787 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
19 Hb_004000_030 0.1971200581 - - putative retrotransposon protein [Phyllostachys edulis]
20 Hb_185830_040 0.1975162176 - - hypothetical protein JCGZ_16423 [Jatropha curcas]

Gene co-expression network

sample Hb_083845_010 Hb_083845_010 Hb_081282_010 Hb_081282_010 Hb_083845_010--Hb_081282_010 Hb_003789_020 Hb_003789_020 Hb_083845_010--Hb_003789_020 Hb_004607_010 Hb_004607_010 Hb_083845_010--Hb_004607_010 Hb_000248_090 Hb_000248_090 Hb_083845_010--Hb_000248_090 Hb_005656_110 Hb_005656_110 Hb_083845_010--Hb_005656_110 Hb_003938_220 Hb_003938_220 Hb_083845_010--Hb_003938_220 Hb_001596_030 Hb_001596_030 Hb_081282_010--Hb_001596_030 Hb_021418_010 Hb_021418_010 Hb_081282_010--Hb_021418_010 Hb_003090_230 Hb_003090_230 Hb_081282_010--Hb_003090_230 Hb_161346_010 Hb_161346_010 Hb_081282_010--Hb_161346_010 Hb_000676_380 Hb_000676_380 Hb_081282_010--Hb_000676_380 Hb_000540_030 Hb_000540_030 Hb_081282_010--Hb_000540_030 Hb_011139_010 Hb_011139_010 Hb_003789_020--Hb_011139_010 Hb_008727_030 Hb_008727_030 Hb_003789_020--Hb_008727_030 Hb_030394_050 Hb_030394_050 Hb_003789_020--Hb_030394_050 Hb_182831_020 Hb_182831_020 Hb_003789_020--Hb_182831_020 Hb_001360_060 Hb_001360_060 Hb_003789_020--Hb_001360_060 Hb_005144_180 Hb_005144_180 Hb_003789_020--Hb_005144_180 Hb_004607_010--Hb_000248_090 Hb_001357_370 Hb_001357_370 Hb_004607_010--Hb_001357_370 Hb_004968_110 Hb_004968_110 Hb_004607_010--Hb_004968_110 Hb_000023_040 Hb_000023_040 Hb_004607_010--Hb_000023_040 Hb_004607_010--Hb_005656_110 Hb_007227_010 Hb_007227_010 Hb_004607_010--Hb_007227_010 Hb_000248_090--Hb_005656_110 Hb_000248_090--Hb_003938_220 Hb_002903_030 Hb_002903_030 Hb_000248_090--Hb_002903_030 Hb_000248_090--Hb_001357_370 Hb_186115_010 Hb_186115_010 Hb_000248_090--Hb_186115_010 Hb_005656_110--Hb_003938_220 Hb_005656_110--Hb_002903_030 Hb_005656_110--Hb_186115_010 Hb_146361_020 Hb_146361_020 Hb_005656_110--Hb_146361_020 Hb_003938_220--Hb_002903_030 Hb_003938_220--Hb_186115_010 Hb_003938_220--Hb_146361_020 Hb_001862_020 Hb_001862_020 Hb_003938_220--Hb_001862_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0433895 0.499845 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0390625 0.650937 0

CAGE analysis