Hb_079212_010

Information

Type -
Description -
Location Contig79212: 4125-4505
Sequence    

Annotation

kegg
ID rcu:RCOM_0353890
description hypothetical protein
nr
ID XP_002529152.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q7XYY2
description Mediator of RNA polymerase II transcription subunit 25 OS=Arabidopsis thaliana GN=MED25 PE=1 SV=1
trembl
ID B9ST33
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0353890 PE=4 SV=1
Gene Ontology
ID GO:0016592
description phytochrome and flowering time regulatory protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079212_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000248_030 0.184059994 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
3 Hb_177103_010 0.1842984667 - - PREDICTED: histone H2AX [Elaeis guineensis]
4 Hb_001235_060 0.1897751355 - - -
5 Hb_122567_020 0.1942878005 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
6 Hb_005318_020 0.2025957179 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
7 Hb_007188_030 0.2139754436 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
8 Hb_169170_010 0.2175103219 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
9 Hb_000617_170 0.2192650121 - - -
10 Hb_000976_030 0.2208271732 - - PREDICTED: molybdenum cofactor sulfurase-like [Citrus sinensis]
11 Hb_003927_150 0.2242378523 - - -
12 Hb_079978_010 0.2284185097 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
13 Hb_000248_010 0.2285484945 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
14 Hb_007083_050 0.2311989435 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
15 Hb_000805_300 0.2403102547 - - -
16 Hb_003656_150 0.2407890133 - - -
17 Hb_037497_010 0.2428593758 - - PREDICTED: choline transporter-like protein 2 isoform X1 [Populus euphratica]
18 Hb_006198_090 0.2429105147 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
19 Hb_068014_010 0.2429240879 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
20 Hb_073559_010 0.2429826535 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]

Gene co-expression network

sample Hb_079212_010 Hb_079212_010 Hb_000248_030 Hb_000248_030 Hb_079212_010--Hb_000248_030 Hb_177103_010 Hb_177103_010 Hb_079212_010--Hb_177103_010 Hb_001235_060 Hb_001235_060 Hb_079212_010--Hb_001235_060 Hb_122567_020 Hb_122567_020 Hb_079212_010--Hb_122567_020 Hb_005318_020 Hb_005318_020 Hb_079212_010--Hb_005318_020 Hb_007188_030 Hb_007188_030 Hb_079212_010--Hb_007188_030 Hb_000248_010 Hb_000248_010 Hb_000248_030--Hb_000248_010 Hb_005933_010 Hb_005933_010 Hb_000248_030--Hb_005933_010 Hb_000248_030--Hb_001235_060 Hb_000248_030--Hb_122567_020 Hb_073559_010 Hb_073559_010 Hb_000248_030--Hb_073559_010 Hb_002960_050 Hb_002960_050 Hb_000248_030--Hb_002960_050 Hb_169170_010 Hb_169170_010 Hb_177103_010--Hb_169170_010 Hb_177103_010--Hb_007188_030 Hb_006198_090 Hb_006198_090 Hb_177103_010--Hb_006198_090 Hb_003656_150 Hb_003656_150 Hb_177103_010--Hb_003656_150 Hb_005679_070 Hb_005679_070 Hb_177103_010--Hb_005679_070 Hb_068014_010 Hb_068014_010 Hb_177103_010--Hb_068014_010 Hb_001235_060--Hb_005933_010 Hb_001235_060--Hb_000248_010 Hb_001235_060--Hb_122567_020 Hb_000805_300 Hb_000805_300 Hb_001235_060--Hb_000805_300 Hb_000002_030 Hb_000002_030 Hb_001235_060--Hb_000002_030 Hb_122567_020--Hb_005933_010 Hb_122567_020--Hb_000805_300 Hb_000617_170 Hb_000617_170 Hb_122567_020--Hb_000617_170 Hb_059952_010 Hb_059952_010 Hb_122567_020--Hb_059952_010 Hb_001385_080 Hb_001385_080 Hb_122567_020--Hb_001385_080 Hb_079978_010 Hb_079978_010 Hb_005318_020--Hb_079978_010 Hb_007083_050 Hb_007083_050 Hb_005318_020--Hb_007083_050 Hb_007447_020 Hb_007447_020 Hb_005318_020--Hb_007447_020 Hb_000683_090 Hb_000683_090 Hb_005318_020--Hb_000683_090 Hb_005318_020--Hb_169170_010 Hb_000084_130 Hb_000084_130 Hb_005318_020--Hb_000084_130 Hb_007188_030--Hb_003656_150 Hb_002815_050 Hb_002815_050 Hb_007188_030--Hb_002815_050 Hb_007188_030--Hb_006198_090 Hb_003030_040 Hb_003030_040 Hb_007188_030--Hb_003030_040 Hb_007188_030--Hb_005679_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.89549 1.25303 0 8.89099 0.996201 36.8491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13465 0 1.00019 3.61239 1.0802

CAGE analysis