Hb_078806_010

Information

Type -
Description -
Location Contig78806: 2406-3053
Sequence    

Annotation

kegg
ID rcu:RCOM_1514180
description ubiquitin-conjugating enzyme rad6, putative
nr
ID KDO82838.1
description hypothetical protein CISIN_1g031839mg [Citrus sinensis]
swissprot
ID P35130
description Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1
trembl
ID A0A067GSZ8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031839mg PE=4 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078806_010 0.0 - - hypothetical protein CISIN_1g031839mg [Citrus sinensis]
2 Hb_000856_380 0.147248287 - - ubiquitin-conjugating enzyme [Medicago truncatula]
3 Hb_002234_100 0.1534858434 - - F-box family protein, putative isoform 1 [Theobroma cacao]
4 Hb_009265_070 0.1625002511 - - PREDICTED: uncharacterized protein LOC105649623 isoform X1 [Jatropha curcas]
5 Hb_000951_100 0.1633535435 - - PREDICTED: uncharacterized protein LOC103436565 isoform X1 [Malus domestica]
6 Hb_001437_150 0.1697719161 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
7 Hb_011519_010 0.1704009455 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
8 Hb_005686_050 0.1708172856 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
9 Hb_001538_090 0.1718852956 - - 40S ribosomal protein S29 [Morus notabilis]
10 Hb_010560_020 0.1726406771 - - PREDICTED: uncharacterized protein LOC105649267 [Jatropha curcas]
11 Hb_000081_010 0.1739276254 - - hypothetical protein B456_012G056000 [Gossypium raimondii]
12 Hb_009767_070 0.173983532 - - PREDICTED: uncharacterized protein LOC105631980 [Jatropha curcas]
13 Hb_004410_080 0.1741257741 - - cellular nucleic acid binding protein, putative [Ricinus communis]
14 Hb_000367_160 0.1741566264 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
15 Hb_001123_130 0.1745918793 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
16 Hb_003938_190 0.1772175873 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06145-like [Jatropha curcas]
17 Hb_002301_060 0.179213217 - - hypothetical protein JCGZ_21483 [Jatropha curcas]
18 Hb_004375_080 0.1793200896 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF073 [Jatropha curcas]
19 Hb_021576_110 0.1799597007 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
20 Hb_004109_040 0.1805428881 - - PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_078806_010 Hb_078806_010 Hb_000856_380 Hb_000856_380 Hb_078806_010--Hb_000856_380 Hb_002234_100 Hb_002234_100 Hb_078806_010--Hb_002234_100 Hb_009265_070 Hb_009265_070 Hb_078806_010--Hb_009265_070 Hb_000951_100 Hb_000951_100 Hb_078806_010--Hb_000951_100 Hb_001437_150 Hb_001437_150 Hb_078806_010--Hb_001437_150 Hb_011519_010 Hb_011519_010 Hb_078806_010--Hb_011519_010 Hb_000856_380--Hb_002234_100 Hb_000856_380--Hb_001437_150 Hb_180424_010 Hb_180424_010 Hb_000856_380--Hb_180424_010 Hb_000868_110 Hb_000868_110 Hb_000856_380--Hb_000868_110 Hb_000367_160 Hb_000367_160 Hb_000856_380--Hb_000367_160 Hb_010560_020 Hb_010560_020 Hb_000856_380--Hb_010560_020 Hb_012389_020 Hb_012389_020 Hb_002234_100--Hb_012389_020 Hb_004586_140 Hb_004586_140 Hb_002234_100--Hb_004586_140 Hb_003125_200 Hb_003125_200 Hb_002234_100--Hb_003125_200 Hb_003747_220 Hb_003747_220 Hb_002234_100--Hb_003747_220 Hb_002234_100--Hb_010560_020 Hb_002701_020 Hb_002701_020 Hb_009265_070--Hb_002701_020 Hb_000988_080 Hb_000988_080 Hb_009265_070--Hb_000988_080 Hb_000690_180 Hb_000690_180 Hb_009265_070--Hb_000690_180 Hb_004545_060 Hb_004545_060 Hb_009265_070--Hb_004545_060 Hb_003055_120 Hb_003055_120 Hb_009265_070--Hb_003055_120 Hb_004032_010 Hb_004032_010 Hb_009265_070--Hb_004032_010 Hb_000169_080 Hb_000169_080 Hb_000951_100--Hb_000169_080 Hb_000081_010 Hb_000081_010 Hb_000951_100--Hb_000081_010 Hb_001124_010 Hb_001124_010 Hb_000951_100--Hb_001124_010 Hb_005194_020 Hb_005194_020 Hb_000951_100--Hb_005194_020 Hb_004096_180 Hb_004096_180 Hb_000951_100--Hb_004096_180 Hb_011671_310 Hb_011671_310 Hb_000951_100--Hb_011671_310 Hb_001123_130 Hb_001123_130 Hb_001437_150--Hb_001123_130 Hb_000527_060 Hb_000527_060 Hb_001437_150--Hb_000527_060 Hb_004162_130 Hb_004162_130 Hb_001437_150--Hb_004162_130 Hb_008566_050 Hb_008566_050 Hb_001437_150--Hb_008566_050 Hb_012286_030 Hb_012286_030 Hb_001437_150--Hb_012286_030 Hb_011519_010--Hb_004162_130 Hb_032202_140 Hb_032202_140 Hb_011519_010--Hb_032202_140 Hb_002600_020 Hb_002600_020 Hb_011519_010--Hb_002600_020 Hb_000917_060 Hb_000917_060 Hb_011519_010--Hb_000917_060 Hb_000465_160 Hb_000465_160 Hb_011519_010--Hb_000465_160 Hb_004410_080 Hb_004410_080 Hb_011519_010--Hb_004410_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
282.35 752.648 1098.55 531.406 464.424 1273.03
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
619.969 1304.51 1121.01 210.498 179.075

CAGE analysis