Hb_000988_080

Information

Type -
Description -
Location Contig988: 68069-70319
Sequence    

Annotation

kegg
ID rcu:RCOM_0906770
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002518586.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9LG23
description Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=2 SV=1
trembl
ID B9RXW7
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0906770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64693: 68081-68268 , PASA_asmbl_64694: 68349-68848 , PASA_asmbl_64695: 69021-69516 , PASA_asmbl_64696: 69824-70026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000988_080 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_003055_120 0.0704398817 - - Protein C20orf11, putative [Ricinus communis]
3 Hb_006541_030 0.0782979058 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
4 Hb_006922_110 0.0840890069 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
5 Hb_000510_320 0.0859898788 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
6 Hb_000056_200 0.0866358781 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
7 Hb_009265_070 0.0871523553 - - PREDICTED: uncharacterized protein LOC105649623 isoform X1 [Jatropha curcas]
8 Hb_003001_140 0.0898761879 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
9 Hb_006117_070 0.0910300233 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
10 Hb_003266_130 0.092268408 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
11 Hb_000086_400 0.0922890648 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_001488_070 0.0929585859 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000788_100 0.0941224362 - - PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Jatropha curcas]
14 Hb_002874_190 0.094210485 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
15 Hb_085863_030 0.0944114275 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
16 Hb_000008_470 0.0945458065 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
17 Hb_007317_210 0.0946289599 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
18 Hb_000000_250 0.0947430097 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
19 Hb_005289_030 0.0955571987 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
20 Hb_005539_350 0.0959434186 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000988_080 Hb_000988_080 Hb_003055_120 Hb_003055_120 Hb_000988_080--Hb_003055_120 Hb_006541_030 Hb_006541_030 Hb_000988_080--Hb_006541_030 Hb_006922_110 Hb_006922_110 Hb_000988_080--Hb_006922_110 Hb_000510_320 Hb_000510_320 Hb_000988_080--Hb_000510_320 Hb_000056_200 Hb_000056_200 Hb_000988_080--Hb_000056_200 Hb_009265_070 Hb_009265_070 Hb_000988_080--Hb_009265_070 Hb_002874_190 Hb_002874_190 Hb_003055_120--Hb_002874_190 Hb_003687_110 Hb_003687_110 Hb_003055_120--Hb_003687_110 Hb_012762_050 Hb_012762_050 Hb_003055_120--Hb_012762_050 Hb_005539_350 Hb_005539_350 Hb_003055_120--Hb_005539_350 Hb_011381_100 Hb_011381_100 Hb_003055_120--Hb_011381_100 Hb_007380_070 Hb_007380_070 Hb_006541_030--Hb_007380_070 Hb_006541_030--Hb_005539_350 Hb_000243_030 Hb_000243_030 Hb_006541_030--Hb_000243_030 Hb_000398_180 Hb_000398_180 Hb_006541_030--Hb_000398_180 Hb_000529_190 Hb_000529_190 Hb_006541_030--Hb_000529_190 Hb_006541_030--Hb_002874_190 Hb_003996_020 Hb_003996_020 Hb_006922_110--Hb_003996_020 Hb_154648_010 Hb_154648_010 Hb_006922_110--Hb_154648_010 Hb_000000_250 Hb_000000_250 Hb_006922_110--Hb_000000_250 Hb_029584_130 Hb_029584_130 Hb_006922_110--Hb_029584_130 Hb_000200_050 Hb_000200_050 Hb_006922_110--Hb_000200_050 Hb_003266_130 Hb_003266_130 Hb_006922_110--Hb_003266_130 Hb_002105_040 Hb_002105_040 Hb_000510_320--Hb_002105_040 Hb_000175_460 Hb_000175_460 Hb_000510_320--Hb_000175_460 Hb_000086_400 Hb_000086_400 Hb_000510_320--Hb_000086_400 Hb_004738_040 Hb_004738_040 Hb_000510_320--Hb_004738_040 Hb_000876_070 Hb_000876_070 Hb_000510_320--Hb_000876_070 Hb_181288_020 Hb_181288_020 Hb_000510_320--Hb_181288_020 Hb_001821_010 Hb_001821_010 Hb_000056_200--Hb_001821_010 Hb_000920_180 Hb_000920_180 Hb_000056_200--Hb_000920_180 Hb_003050_080 Hb_003050_080 Hb_000056_200--Hb_003050_080 Hb_000056_200--Hb_000243_030 Hb_063716_050 Hb_063716_050 Hb_000056_200--Hb_063716_050 Hb_002044_080 Hb_002044_080 Hb_000056_200--Hb_002044_080 Hb_002701_020 Hb_002701_020 Hb_009265_070--Hb_002701_020 Hb_000690_180 Hb_000690_180 Hb_009265_070--Hb_000690_180 Hb_004545_060 Hb_004545_060 Hb_009265_070--Hb_004545_060 Hb_009265_070--Hb_003055_120 Hb_004032_010 Hb_004032_010 Hb_009265_070--Hb_004032_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.89174 4.64322 3.95747 5.02158 6.47934 11.5283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.87604 14.6864 13.3263 3.15256 3.709

CAGE analysis