Hb_037497_010

Information

Type -
Description -
Location Contig37497: 282-464
Sequence    

Annotation

kegg
ID pop:POPTR_0011s12170g
description POPTRDRAFT_728407; choline transporter-related family protein
nr
ID XP_011029459.1
description PREDICTED: choline transporter-like protein 2 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HZW2
description Choline transporter-related family protein OS=Populus trichocarpa GN=POPTR_0011s12170g PE=4 SV=2
Gene Ontology
ID GO:0005886
description choline transporter-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_037497_010 0.0 - - PREDICTED: choline transporter-like protein 2 isoform X1 [Populus euphratica]
2 Hb_079212_010 0.2428593758 - - conserved hypothetical protein [Ricinus communis]
3 Hb_047091_010 0.2519801406 - - GABA-specific permease, putative [Ricinus communis]
4 Hb_001235_060 0.2530143781 - - -
5 Hb_031866_050 0.263868842 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
6 Hb_088065_010 0.275893671 - - hypothetical protein glysoja_007934 [Glycine soja]
7 Hb_001231_070 0.2761689942 - - -
8 Hb_007447_020 0.276844832 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
9 Hb_003927_150 0.2780002557 - - -
10 Hb_000117_010 0.2786026184 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Malus domestica]
11 Hb_000523_100 0.2828501839 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
12 Hb_000683_090 0.283013155 - - stress enhanced protein [Medicago truncatula]
13 Hb_001385_090 0.2866182709 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
14 Hb_088774_010 0.2869219037 - - -
15 Hb_000248_030 0.2894070393 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
16 Hb_122567_020 0.289487379 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
17 Hb_005318_020 0.2898820042 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
18 Hb_073559_010 0.2904786871 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
19 Hb_005016_070 0.2940065396 - - -
20 Hb_000976_030 0.2940300536 - - PREDICTED: molybdenum cofactor sulfurase-like [Citrus sinensis]

Gene co-expression network

sample Hb_037497_010 Hb_037497_010 Hb_079212_010 Hb_079212_010 Hb_037497_010--Hb_079212_010 Hb_047091_010 Hb_047091_010 Hb_037497_010--Hb_047091_010 Hb_001235_060 Hb_001235_060 Hb_037497_010--Hb_001235_060 Hb_031866_050 Hb_031866_050 Hb_037497_010--Hb_031866_050 Hb_088065_010 Hb_088065_010 Hb_037497_010--Hb_088065_010 Hb_001231_070 Hb_001231_070 Hb_037497_010--Hb_001231_070 Hb_000248_030 Hb_000248_030 Hb_079212_010--Hb_000248_030 Hb_177103_010 Hb_177103_010 Hb_079212_010--Hb_177103_010 Hb_079212_010--Hb_001235_060 Hb_122567_020 Hb_122567_020 Hb_079212_010--Hb_122567_020 Hb_005318_020 Hb_005318_020 Hb_079212_010--Hb_005318_020 Hb_007188_030 Hb_007188_030 Hb_079212_010--Hb_007188_030 Hb_000122_140 Hb_000122_140 Hb_047091_010--Hb_000122_140 Hb_000261_360 Hb_000261_360 Hb_047091_010--Hb_000261_360 Hb_004243_010 Hb_004243_010 Hb_047091_010--Hb_004243_010 Hb_124587_010 Hb_124587_010 Hb_047091_010--Hb_124587_010 Hb_008277_030 Hb_008277_030 Hb_047091_010--Hb_008277_030 Hb_005933_010 Hb_005933_010 Hb_001235_060--Hb_005933_010 Hb_001235_060--Hb_000248_030 Hb_000248_010 Hb_000248_010 Hb_001235_060--Hb_000248_010 Hb_001235_060--Hb_122567_020 Hb_000805_300 Hb_000805_300 Hb_001235_060--Hb_000805_300 Hb_000002_030 Hb_000002_030 Hb_001235_060--Hb_000002_030 Hb_007447_020 Hb_007447_020 Hb_031866_050--Hb_007447_020 Hb_003030_040 Hb_003030_040 Hb_031866_050--Hb_003030_040 Hb_003656_150 Hb_003656_150 Hb_031866_050--Hb_003656_150 Hb_031866_050--Hb_007188_030 Hb_000683_090 Hb_000683_090 Hb_031866_050--Hb_000683_090 Hb_031866_050--Hb_177103_010 Hb_000523_100 Hb_000523_100 Hb_088065_010--Hb_000523_100 Hb_073559_010 Hb_073559_010 Hb_088065_010--Hb_073559_010 Hb_088065_010--Hb_000248_010 Hb_088774_010 Hb_088774_010 Hb_088065_010--Hb_088774_010 Hb_005965_010 Hb_005965_010 Hb_088065_010--Hb_005965_010 Hb_032225_020 Hb_032225_020 Hb_088065_010--Hb_032225_020 Hb_006995_010 Hb_006995_010 Hb_001231_070--Hb_006995_010 Hb_068014_010 Hb_068014_010 Hb_001231_070--Hb_068014_010 Hb_169170_010 Hb_169170_010 Hb_001231_070--Hb_169170_010 Hb_001222_040 Hb_001222_040 Hb_001231_070--Hb_001222_040 Hb_001231_070--Hb_003656_150 Hb_001231_070--Hb_000683_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6915 0 0 14.1936 3.15865 53.9772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.57912 0 1.96313 2.50838 3.85797

CAGE analysis