Hb_047091_010

Information

Type -
Description -
Location Contig47091: 3381-4775
Sequence    

Annotation

kegg
ID rcu:RCOM_0562380
description GABA-specific permease, putative
nr
ID XP_002520314.1
description GABA-specific permease, putative [Ricinus communis]
swissprot
ID B9EXZ6
description Amino-acid permease BAT1 homolog OS=Oryza sativa subsp. japonica GN=BAT1 PE=2 SV=1
trembl
ID B9S2U5
description GABA-specific permease, putative OS=Ricinus communis GN=RCOM_0562380 PE=4 SV=1
Gene Ontology
ID GO:0016020
description amino-acid permease bat1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047091_010 0.0 - - GABA-specific permease, putative [Ricinus communis]
2 Hb_000122_140 0.2385294265 - - -
3 Hb_000261_360 0.2480707236 - - unknown [Lotus japonicus]
4 Hb_037497_010 0.2519801406 - - PREDICTED: choline transporter-like protein 2 isoform X1 [Populus euphratica]
5 Hb_004243_010 0.2576177175 - - hypothetical protein JCGZ_01580 [Jatropha curcas]
6 Hb_124587_010 0.2658667204 - - PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]
7 Hb_008277_030 0.2680460179 - - hypothetical protein CICLE_v10024419mg, partial [Citrus clementina]
8 Hb_012305_040 0.2709691134 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
9 Hb_056506_050 0.2762724804 - - hypothetical protein B456_007G294000 [Gossypium raimondii]
10 Hb_000295_090 0.2770476019 - - Clathrin light chain 2 [Glycine soja]
11 Hb_000523_100 0.2774595387 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
12 Hb_001231_070 0.277556387 - - -
13 Hb_001722_020 0.2783238765 - - -
14 Hb_000176_120 0.280563966 - - seryl-tRNA synthetase, putative [Ricinus communis]
15 Hb_088774_010 0.2810480544 - - -
16 Hb_001235_060 0.2821377405 - - -
17 Hb_000117_010 0.2864423334 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Malus domestica]
18 Hb_144898_010 0.286666682 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
19 Hb_073559_010 0.2886498484 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
20 Hb_000025_100 0.2906650443 - - -

Gene co-expression network

sample Hb_047091_010 Hb_047091_010 Hb_000122_140 Hb_000122_140 Hb_047091_010--Hb_000122_140 Hb_000261_360 Hb_000261_360 Hb_047091_010--Hb_000261_360 Hb_037497_010 Hb_037497_010 Hb_047091_010--Hb_037497_010 Hb_004243_010 Hb_004243_010 Hb_047091_010--Hb_004243_010 Hb_124587_010 Hb_124587_010 Hb_047091_010--Hb_124587_010 Hb_008277_030 Hb_008277_030 Hb_047091_010--Hb_008277_030 Hb_007380_110 Hb_007380_110 Hb_000122_140--Hb_007380_110 Hb_000953_060 Hb_000953_060 Hb_000122_140--Hb_000953_060 Hb_012305_040 Hb_012305_040 Hb_000122_140--Hb_012305_040 Hb_144898_010 Hb_144898_010 Hb_000122_140--Hb_144898_010 Hb_000122_140--Hb_004243_010 Hb_065525_030 Hb_065525_030 Hb_000122_140--Hb_065525_030 Hb_000265_130 Hb_000265_130 Hb_000261_360--Hb_000265_130 Hb_010504_030 Hb_010504_030 Hb_000261_360--Hb_010504_030 Hb_000176_120 Hb_000176_120 Hb_000261_360--Hb_000176_120 Hb_000001_040 Hb_000001_040 Hb_000261_360--Hb_000001_040 Hb_166480_010 Hb_166480_010 Hb_000261_360--Hb_166480_010 Hb_000261_360--Hb_008277_030 Hb_079212_010 Hb_079212_010 Hb_037497_010--Hb_079212_010 Hb_001235_060 Hb_001235_060 Hb_037497_010--Hb_001235_060 Hb_031866_050 Hb_031866_050 Hb_037497_010--Hb_031866_050 Hb_088065_010 Hb_088065_010 Hb_037497_010--Hb_088065_010 Hb_001231_070 Hb_001231_070 Hb_037497_010--Hb_001231_070 Hb_005054_070 Hb_005054_070 Hb_004243_010--Hb_005054_070 Hb_004241_040 Hb_004241_040 Hb_004243_010--Hb_004241_040 Hb_000529_100 Hb_000529_100 Hb_004243_010--Hb_000529_100 Hb_004243_010--Hb_012305_040 Hb_004243_010--Hb_144898_010 Hb_004243_010--Hb_000176_120 Hb_103351_010 Hb_103351_010 Hb_124587_010--Hb_103351_010 Hb_000117_020 Hb_000117_020 Hb_124587_010--Hb_000117_020 Hb_074961_010 Hb_074961_010 Hb_124587_010--Hb_074961_010 Hb_000117_010 Hb_000117_010 Hb_124587_010--Hb_000117_010 Hb_002253_110 Hb_002253_110 Hb_124587_010--Hb_002253_110 Hb_121236_010 Hb_121236_010 Hb_124587_010--Hb_121236_010 Hb_008277_030--Hb_000265_130 Hb_073559_010 Hb_073559_010 Hb_008277_030--Hb_073559_010 Hb_000204_020 Hb_000204_020 Hb_008277_030--Hb_000204_020 Hb_032531_060 Hb_032531_060 Hb_008277_030--Hb_032531_060 Hb_000248_030 Hb_000248_030 Hb_008277_030--Hb_000248_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.303788 0 0 0.197322 0.0757912 0.699128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0902329 0.0709259 0 0.08689 0

CAGE analysis