Hb_033153_020

Information

Type transcription factor
Description TF Family: ARF
Location Contig33153: 13387-19123
Sequence    

Annotation

kegg
ID rcu:RCOM_1011410
description Auxin response factor, putative
nr
ID XP_002522498.1
description Auxin response factor, putative [Ricinus communis]
swissprot
ID O23661
description Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2
trembl
ID B9S929
description Auxin response factor OS=Ricinus communis GN=RCOM_1011410 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34867: 13508-14522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033153_020 0.0 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
2 Hb_012395_180 0.0865399681 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
3 Hb_007741_020 0.1251440827 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
4 Hb_187739_020 0.1335953098 - - PREDICTED: B2 protein [Jatropha curcas]
5 Hb_000025_090 0.1375938319 - - tubulin beta chain, putative [Ricinus communis]
6 Hb_106724_020 0.1379182153 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
7 Hb_000069_160 0.1383588414 - - -
8 Hb_006487_050 0.1385090297 - - hypothetical protein PHAVU_005G049600g [Phaseolus vulgaris]
9 Hb_002982_040 0.1392317955 - - mta/sah nucleosidase, putative [Ricinus communis]
10 Hb_005016_170 0.1399301764 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003502_080 0.1416210777 - - vacuolar protein sorting, putative [Ricinus communis]
12 Hb_000107_200 0.1423219485 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
13 Hb_002671_100 0.143404986 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
14 Hb_000086_200 0.1441634611 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_000005_260 0.1451181275 - - transferase, putative [Ricinus communis]
16 Hb_000866_030 0.1452270496 - - hypothetical protein RCOM_1615820 [Ricinus communis]
17 Hb_008120_010 0.1454832931 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
18 Hb_000249_070 0.1454957502 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
19 Hb_001380_020 0.1478303578 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
20 Hb_005565_040 0.1485800693 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_033153_020 Hb_033153_020 Hb_012395_180 Hb_012395_180 Hb_033153_020--Hb_012395_180 Hb_007741_020 Hb_007741_020 Hb_033153_020--Hb_007741_020 Hb_187739_020 Hb_187739_020 Hb_033153_020--Hb_187739_020 Hb_000025_090 Hb_000025_090 Hb_033153_020--Hb_000025_090 Hb_106724_020 Hb_106724_020 Hb_033153_020--Hb_106724_020 Hb_000069_160 Hb_000069_160 Hb_033153_020--Hb_000069_160 Hb_002671_100 Hb_002671_100 Hb_012395_180--Hb_002671_100 Hb_004934_070 Hb_004934_070 Hb_012395_180--Hb_004934_070 Hb_007403_060 Hb_007403_060 Hb_012395_180--Hb_007403_060 Hb_000785_080 Hb_000785_080 Hb_012395_180--Hb_000785_080 Hb_000083_250 Hb_000083_250 Hb_012395_180--Hb_000083_250 Hb_000567_050 Hb_000567_050 Hb_007741_020--Hb_000567_050 Hb_000077_090 Hb_000077_090 Hb_007741_020--Hb_000077_090 Hb_000212_240 Hb_000212_240 Hb_007741_020--Hb_000212_240 Hb_002054_040 Hb_002054_040 Hb_007741_020--Hb_002054_040 Hb_002374_050 Hb_002374_050 Hb_007741_020--Hb_002374_050 Hb_002784_060 Hb_002784_060 Hb_007741_020--Hb_002784_060 Hb_000866_030 Hb_000866_030 Hb_187739_020--Hb_000866_030 Hb_002982_040 Hb_002982_040 Hb_187739_020--Hb_002982_040 Hb_003656_140 Hb_003656_140 Hb_187739_020--Hb_003656_140 Hb_000160_220 Hb_000160_220 Hb_187739_020--Hb_000160_220 Hb_031862_180 Hb_031862_180 Hb_187739_020--Hb_031862_180 Hb_008714_020 Hb_008714_020 Hb_187739_020--Hb_008714_020 Hb_000933_060 Hb_000933_060 Hb_000025_090--Hb_000933_060 Hb_000025_090--Hb_000083_250 Hb_000107_200 Hb_000107_200 Hb_000025_090--Hb_000107_200 Hb_001018_130 Hb_001018_130 Hb_000025_090--Hb_001018_130 Hb_000025_090--Hb_000077_090 Hb_000086_200 Hb_000086_200 Hb_000025_090--Hb_000086_200 Hb_000630_050 Hb_000630_050 Hb_106724_020--Hb_000630_050 Hb_003813_130 Hb_003813_130 Hb_106724_020--Hb_003813_130 Hb_004055_030 Hb_004055_030 Hb_106724_020--Hb_004055_030 Hb_001102_140 Hb_001102_140 Hb_106724_020--Hb_001102_140 Hb_000808_280 Hb_000808_280 Hb_106724_020--Hb_000808_280 Hb_001454_130 Hb_001454_130 Hb_106724_020--Hb_001454_130 Hb_050455_010 Hb_050455_010 Hb_000069_160--Hb_050455_010 Hb_002217_310 Hb_002217_310 Hb_000069_160--Hb_002217_310 Hb_000069_160--Hb_002982_040 Hb_003847_080 Hb_003847_080 Hb_000069_160--Hb_003847_080 Hb_000849_070 Hb_000849_070 Hb_000069_160--Hb_000849_070 Hb_003502_080 Hb_003502_080 Hb_000069_160--Hb_003502_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6863 5.59728 2.18164 12.1704 7.15537 13.5728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5548 4.65549 3.37441 4.31407 2.82892

CAGE analysis