Hb_012395_180

Information

Type -
Description -
Location Contig12395: 95596-97648
Sequence    

Annotation

kegg
ID rcu:RCOM_1217440
description DUF26 domain-containing protein 2 precursor, putative
nr
ID XP_002528357.1
description DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
swissprot
ID Q6NM73
description Cysteine-rich repeat secretory protein 3 OS=Arabidopsis thaliana GN=CRRSP3 PE=1 SV=1
trembl
ID B9SQT8
description DUF26 domain-containing protein 2, putative OS=Ricinus communis GN=RCOM_1217440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07280: 95469-96737 , PASA_asmbl_07281: 96753-96992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_180 0.0 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
2 Hb_033153_020 0.0865399681 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
3 Hb_002671_100 0.109596618 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
4 Hb_004934_070 0.1154690018 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
5 Hb_007403_060 0.1169840099 - - PREDICTED: CAAX prenyl protease 2 [Jatropha curcas]
6 Hb_000785_080 0.1187538458 - - PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
7 Hb_000083_250 0.1203496894 - - ring finger protein, putative [Ricinus communis]
8 Hb_000107_200 0.1215094761 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
9 Hb_080313_010 0.1222632461 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
10 Hb_000640_120 0.1240998025 - - PREDICTED: uncharacterized protein LOC105642625 [Jatropha curcas]
11 Hb_003641_060 0.1249890014 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
12 Hb_004881_020 0.1251121436 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
13 Hb_000808_280 0.1252425449 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007741_020 0.1265719221 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
15 Hb_000038_080 0.1297460253 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
16 Hb_002235_170 0.1298377975 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]
17 Hb_001842_100 0.1300759027 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]
18 Hb_000249_070 0.1300933402 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
19 Hb_000521_120 0.1307355316 - - PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_008120_010 0.1312347141 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]

Gene co-expression network

sample Hb_012395_180 Hb_012395_180 Hb_033153_020 Hb_033153_020 Hb_012395_180--Hb_033153_020 Hb_002671_100 Hb_002671_100 Hb_012395_180--Hb_002671_100 Hb_004934_070 Hb_004934_070 Hb_012395_180--Hb_004934_070 Hb_007403_060 Hb_007403_060 Hb_012395_180--Hb_007403_060 Hb_000785_080 Hb_000785_080 Hb_012395_180--Hb_000785_080 Hb_000083_250 Hb_000083_250 Hb_012395_180--Hb_000083_250 Hb_007741_020 Hb_007741_020 Hb_033153_020--Hb_007741_020 Hb_187739_020 Hb_187739_020 Hb_033153_020--Hb_187739_020 Hb_000025_090 Hb_000025_090 Hb_033153_020--Hb_000025_090 Hb_106724_020 Hb_106724_020 Hb_033153_020--Hb_106724_020 Hb_000069_160 Hb_000069_160 Hb_033153_020--Hb_000069_160 Hb_007594_130 Hb_007594_130 Hb_002671_100--Hb_007594_130 Hb_040262_010 Hb_040262_010 Hb_002671_100--Hb_040262_010 Hb_004881_020 Hb_004881_020 Hb_002671_100--Hb_004881_020 Hb_144598_030 Hb_144598_030 Hb_002671_100--Hb_144598_030 Hb_004117_130 Hb_004117_130 Hb_002671_100--Hb_004117_130 Hb_000260_170 Hb_000260_170 Hb_002671_100--Hb_000260_170 Hb_005862_010 Hb_005862_010 Hb_004934_070--Hb_005862_010 Hb_004934_070--Hb_000785_080 Hb_002374_020 Hb_002374_020 Hb_004934_070--Hb_002374_020 Hb_003641_060 Hb_003641_060 Hb_004934_070--Hb_003641_060 Hb_004934_070--Hb_004881_020 Hb_004934_070--Hb_144598_030 Hb_008120_010 Hb_008120_010 Hb_007403_060--Hb_008120_010 Hb_011671_040 Hb_011671_040 Hb_007403_060--Hb_011671_040 Hb_003940_040 Hb_003940_040 Hb_007403_060--Hb_003940_040 Hb_000270_490 Hb_000270_490 Hb_007403_060--Hb_000270_490 Hb_000808_280 Hb_000808_280 Hb_007403_060--Hb_000808_280 Hb_000120_060 Hb_000120_060 Hb_007403_060--Hb_000120_060 Hb_000785_080--Hb_003641_060 Hb_000083_160 Hb_000083_160 Hb_000785_080--Hb_000083_160 Hb_003010_020 Hb_003010_020 Hb_000785_080--Hb_003010_020 Hb_000038_080 Hb_000038_080 Hb_000785_080--Hb_000038_080 Hb_000785_080--Hb_004881_020 Hb_000083_250--Hb_000808_280 Hb_001454_130 Hb_001454_130 Hb_000083_250--Hb_001454_130 Hb_000630_050 Hb_000630_050 Hb_000083_250--Hb_000630_050 Hb_007904_160 Hb_007904_160 Hb_000083_250--Hb_007904_160 Hb_000146_050 Hb_000146_050 Hb_000083_250--Hb_000146_050 Hb_001018_130 Hb_001018_130 Hb_000083_250--Hb_001018_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4732 5.85442 2.99228 13.6114 8.21867 16.051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0199 7.27923 3.53323 8.33483 4.77529

CAGE analysis