Hb_030312_080

Information

Type -
Description -
Location Contig30312: 44860-52120
Sequence    

Annotation

kegg
ID rcu:RCOM_0774500
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID AFC88293.1
description calcium-dependent protein kinase 6 [Hevea brasiliensis]
swissprot
ID Q9SCS2
description CDPK-related kinase 5 OS=Arabidopsis thaliana GN=CRK5 PE=2 SV=1
trembl
ID J7F6B4
description Calcium-dependent protein kinase 6 OS=Hevea brasiliensis GN=CDPK6 PE=2 SV=1
Gene Ontology
ID GO:0004683
description cdpk-related kinase 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31984: 49873-50969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030312_080 0.0 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
2 Hb_000679_130 0.0860426885 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_000107_400 0.0867231099 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]
4 Hb_003018_130 0.0908632988 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
5 Hb_004032_410 0.0917629354 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
6 Hb_000665_160 0.0919494588 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
7 Hb_002749_110 0.0919619182 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
8 Hb_150651_030 0.0944499858 - - PREDICTED: metallophosphoesterase 1-like [Jatropha curcas]
9 Hb_027472_120 0.0947196914 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_000544_010 0.0950433814 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
11 Hb_004007_220 0.0966025658 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
12 Hb_008695_020 0.0967327909 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
13 Hb_000076_130 0.0976698963 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
14 Hb_000849_020 0.0986129948 - - PREDICTED: uncharacterized protein LOC105644228 isoform X1 [Jatropha curcas]
15 Hb_000856_420 0.0986757921 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_003994_200 0.09929448 - - PREDICTED: uncharacterized protein LOC105646142 [Jatropha curcas]
17 Hb_034432_030 0.0998458661 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
18 Hb_007007_060 0.1008512952 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
19 Hb_003126_100 0.1019918186 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
20 Hb_000922_020 0.1021839761 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_030312_080 Hb_030312_080 Hb_000679_130 Hb_000679_130 Hb_030312_080--Hb_000679_130 Hb_000107_400 Hb_000107_400 Hb_030312_080--Hb_000107_400 Hb_003018_130 Hb_003018_130 Hb_030312_080--Hb_003018_130 Hb_004032_410 Hb_004032_410 Hb_030312_080--Hb_004032_410 Hb_000665_160 Hb_000665_160 Hb_030312_080--Hb_000665_160 Hb_002749_110 Hb_002749_110 Hb_030312_080--Hb_002749_110 Hb_000025_110 Hb_000025_110 Hb_000679_130--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_000679_130--Hb_001444_010 Hb_000367_130 Hb_000367_130 Hb_000679_130--Hb_000367_130 Hb_001599_030 Hb_001599_030 Hb_000679_130--Hb_001599_030 Hb_007262_020 Hb_007262_020 Hb_000679_130--Hb_007262_020 Hb_006915_060 Hb_006915_060 Hb_000679_130--Hb_006915_060 Hb_000107_400--Hb_002749_110 Hb_008695_020 Hb_008695_020 Hb_000107_400--Hb_008695_020 Hb_116349_030 Hb_116349_030 Hb_000107_400--Hb_116349_030 Hb_000574_440 Hb_000574_440 Hb_000107_400--Hb_000574_440 Hb_000849_020 Hb_000849_020 Hb_000107_400--Hb_000849_020 Hb_000107_400--Hb_003018_130 Hb_002823_030 Hb_002823_030 Hb_003018_130--Hb_002823_030 Hb_003018_130--Hb_002749_110 Hb_002835_230 Hb_002835_230 Hb_003018_130--Hb_002835_230 Hb_001195_560 Hb_001195_560 Hb_003018_130--Hb_001195_560 Hb_004785_100 Hb_004785_100 Hb_003018_130--Hb_004785_100 Hb_003018_130--Hb_000574_440 Hb_150651_030 Hb_150651_030 Hb_004032_410--Hb_150651_030 Hb_003440_060 Hb_003440_060 Hb_004032_410--Hb_003440_060 Hb_001489_050 Hb_001489_050 Hb_004032_410--Hb_001489_050 Hb_000544_010 Hb_000544_010 Hb_004032_410--Hb_000544_010 Hb_000076_130 Hb_000076_130 Hb_004032_410--Hb_000076_130 Hb_000915_080 Hb_000915_080 Hb_004032_410--Hb_000915_080 Hb_000665_160--Hb_000076_130 Hb_000665_160--Hb_000544_010 Hb_002909_050 Hb_002909_050 Hb_000665_160--Hb_002909_050 Hb_000665_160--Hb_000107_400 Hb_007007_060 Hb_007007_060 Hb_000665_160--Hb_007007_060 Hb_002893_070 Hb_002893_070 Hb_000665_160--Hb_002893_070 Hb_000152_260 Hb_000152_260 Hb_002749_110--Hb_000152_260 Hb_002093_030 Hb_002093_030 Hb_002749_110--Hb_002093_030 Hb_001473_090 Hb_001473_090 Hb_002749_110--Hb_001473_090 Hb_002749_110--Hb_001599_030 Hb_003126_100 Hb_003126_100 Hb_002749_110--Hb_003126_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6687 6.8761 10.9589 6.87917 16.0208 12.6616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.94572 4.98537 8.15806 3.55635 10.1779

CAGE analysis