Hb_011174_060

Information

Type -
Description -
Location Contig11174: 24100-27334
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03568: 16608-29188
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011174_060 0.0 - - -
2 Hb_000035_310 0.2550200234 - - hypothetical protein POPTR_0006s28170g [Populus trichocarpa]
3 Hb_001390_010 0.2624670857 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
4 Hb_004324_240 0.2647641044 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
5 Hb_001103_080 0.2841320651 - - -
6 Hb_000016_030 0.2862098545 - - PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Jatropha curcas]
7 Hb_001882_110 0.2995800269 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
8 Hb_000345_210 0.3027435058 - - PREDICTED: uncharacterized protein LOC105647523 [Jatropha curcas]
9 Hb_158253_010 0.3040667678 - - -
10 Hb_030627_040 0.3051968345 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
11 Hb_120662_010 0.3057529431 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
12 Hb_004635_080 0.3094318395 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_000302_160 0.3105207909 - - PREDICTED: uncharacterized protein LOC105648403 [Jatropha curcas]
14 Hb_000347_270 0.3113717212 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
15 Hb_001276_020 0.3122663514 - - hypothetical protein VITISV_003263 [Vitis vinifera]
16 Hb_003376_080 0.3131500151 - - PREDICTED: uncharacterized protein LOC105642190 isoform X1 [Jatropha curcas]
17 Hb_019516_030 0.3139463049 - - Calcyclin-binding protein, putative [Ricinus communis]
18 Hb_010174_210 0.3168566751 - - PREDICTED: small heat shock protein, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_118977_010 0.3171799909 - - conserved hypothetical protein [Ricinus communis]
20 Hb_022250_170 0.3176662642 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Populus euphratica]

Gene co-expression network

sample Hb_011174_060 Hb_011174_060 Hb_000035_310 Hb_000035_310 Hb_011174_060--Hb_000035_310 Hb_001390_010 Hb_001390_010 Hb_011174_060--Hb_001390_010 Hb_004324_240 Hb_004324_240 Hb_011174_060--Hb_004324_240 Hb_001103_080 Hb_001103_080 Hb_011174_060--Hb_001103_080 Hb_000016_030 Hb_000016_030 Hb_011174_060--Hb_000016_030 Hb_001882_110 Hb_001882_110 Hb_011174_060--Hb_001882_110 Hb_120662_010 Hb_120662_010 Hb_000035_310--Hb_120662_010 Hb_004994_340 Hb_004994_340 Hb_000035_310--Hb_004994_340 Hb_002411_130 Hb_002411_130 Hb_000035_310--Hb_002411_130 Hb_000001_160 Hb_000001_160 Hb_000035_310--Hb_000001_160 Hb_009119_030 Hb_009119_030 Hb_000035_310--Hb_009119_030 Hb_003492_010 Hb_003492_010 Hb_000035_310--Hb_003492_010 Hb_030627_040 Hb_030627_040 Hb_001390_010--Hb_030627_040 Hb_000037_110 Hb_000037_110 Hb_001390_010--Hb_000037_110 Hb_005527_030 Hb_005527_030 Hb_001390_010--Hb_005527_030 Hb_000749_110 Hb_000749_110 Hb_001390_010--Hb_000749_110 Hb_000207_190 Hb_000207_190 Hb_001390_010--Hb_000207_190 Hb_004635_080 Hb_004635_080 Hb_001390_010--Hb_004635_080 Hb_005460_030 Hb_005460_030 Hb_004324_240--Hb_005460_030 Hb_018954_020 Hb_018954_020 Hb_004324_240--Hb_018954_020 Hb_001916_120 Hb_001916_120 Hb_004324_240--Hb_001916_120 Hb_002159_030 Hb_002159_030 Hb_004324_240--Hb_002159_030 Hb_004324_240--Hb_000016_030 Hb_000215_260 Hb_000215_260 Hb_004324_240--Hb_000215_260 Hb_004884_030 Hb_004884_030 Hb_001103_080--Hb_004884_030 Hb_000130_190 Hb_000130_190 Hb_001103_080--Hb_000130_190 Hb_003814_030 Hb_003814_030 Hb_001103_080--Hb_003814_030 Hb_001546_070 Hb_001546_070 Hb_001103_080--Hb_001546_070 Hb_008029_020 Hb_008029_020 Hb_001103_080--Hb_008029_020 Hb_002235_120 Hb_002235_120 Hb_001103_080--Hb_002235_120 Hb_000270_160 Hb_000270_160 Hb_000016_030--Hb_000270_160 Hb_000302_160 Hb_000302_160 Hb_000016_030--Hb_000302_160 Hb_000198_070 Hb_000198_070 Hb_000016_030--Hb_000198_070 Hb_004374_080 Hb_004374_080 Hb_000016_030--Hb_004374_080 Hb_000365_160 Hb_000365_160 Hb_000016_030--Hb_000365_160 Hb_002320_070 Hb_002320_070 Hb_001882_110--Hb_002320_070 Hb_003894_040 Hb_003894_040 Hb_001882_110--Hb_003894_040 Hb_000637_140 Hb_000637_140 Hb_001882_110--Hb_000637_140 Hb_002681_170 Hb_002681_170 Hb_001882_110--Hb_002681_170 Hb_001882_110--Hb_000365_160 Hb_002805_060 Hb_002805_060 Hb_001882_110--Hb_002805_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.211512 0.0852817 0.0526113 0.230388 0.452863 0.28309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.18387 0 0 0.243223

CAGE analysis