Hb_009557_040

Information

Type -
Description -
Location Contig9557: 32798-33493
Sequence    

Annotation

kegg
ID rcu:RCOM_1172110
description hypothetical protein
nr
ID XP_012088206.1
description PREDICTED: putative protein N-methyltransferase YNL024C [Jatropha curcas]
swissprot
ID Q9H867
description Protein-lysine methyltransferase METTL21D OS=Homo sapiens GN=VCPKMT PE=1 SV=2
trembl
ID A0A067JX06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25731 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein n-lysine methyltransferase mettl21a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63530: 29971-33322
cDNA
(Sanger)
(ID:Location)		 027_O17.ab1: 32948-33419

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009557_040 0.0 - - PREDICTED: putative protein N-methyltransferase YNL024C [Jatropha curcas]
2 Hb_001083_030 0.1001411259 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
3 Hb_160233_010 0.1017018365 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
4 Hb_000465_470 0.1019679988 - - unknown [Picea sitchensis]
5 Hb_000832_090 0.103723764 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
6 Hb_001541_260 0.1115616958 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
7 Hb_002351_020 0.1143853107 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
8 Hb_000032_490 0.115176915 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
9 Hb_000946_120 0.1197564298 - - DNA binding protein, putative [Ricinus communis]
10 Hb_144787_030 0.1203760872 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
11 Hb_004724_320 0.1230502484 - - Vesicle-associated membrane protein, putative [Ricinus communis]
12 Hb_001408_100 0.1235510041 - - pseudouridylate synthase, putative [Ricinus communis]
13 Hb_000663_040 0.1237872487 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
14 Hb_004512_020 0.1272216336 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
15 Hb_001752_030 0.128495034 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
16 Hb_007747_060 0.1286584215 - - PREDICTED: mitochondrial fission protein ELM1 isoform X1 [Jatropha curcas]
17 Hb_002367_130 0.1296255027 - - UNC-50 family protein isoform 1 [Theobroma cacao]
18 Hb_000140_080 0.1299780693 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
19 Hb_012132_030 0.1303988492 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
20 Hb_000861_070 0.1308132327 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009557_040 Hb_009557_040 Hb_001083_030 Hb_001083_030 Hb_009557_040--Hb_001083_030 Hb_160233_010 Hb_160233_010 Hb_009557_040--Hb_160233_010 Hb_000465_470 Hb_000465_470 Hb_009557_040--Hb_000465_470 Hb_000832_090 Hb_000832_090 Hb_009557_040--Hb_000832_090 Hb_001541_260 Hb_001541_260 Hb_009557_040--Hb_001541_260 Hb_002351_020 Hb_002351_020 Hb_009557_040--Hb_002351_020 Hb_025669_020 Hb_025669_020 Hb_001083_030--Hb_025669_020 Hb_102129_070 Hb_102129_070 Hb_001083_030--Hb_102129_070 Hb_000946_120 Hb_000946_120 Hb_001083_030--Hb_000946_120 Hb_000032_490 Hb_000032_490 Hb_001083_030--Hb_000032_490 Hb_000365_140 Hb_000365_140 Hb_001083_030--Hb_000365_140 Hb_000107_530 Hb_000107_530 Hb_001083_030--Hb_000107_530 Hb_160233_010--Hb_000032_490 Hb_077562_050 Hb_077562_050 Hb_160233_010--Hb_077562_050 Hb_000502_050 Hb_000502_050 Hb_160233_010--Hb_000502_050 Hb_003785_040 Hb_003785_040 Hb_160233_010--Hb_003785_040 Hb_160233_010--Hb_002351_020 Hb_000003_290 Hb_000003_290 Hb_160233_010--Hb_000003_290 Hb_000465_470--Hb_001541_260 Hb_106552_050 Hb_106552_050 Hb_000465_470--Hb_106552_050 Hb_000236_100 Hb_000236_100 Hb_000465_470--Hb_000236_100 Hb_000663_040 Hb_000663_040 Hb_000465_470--Hb_000663_040 Hb_002301_220 Hb_002301_220 Hb_000465_470--Hb_002301_220 Hb_000465_470--Hb_000032_490 Hb_000732_120 Hb_000732_120 Hb_000832_090--Hb_000732_120 Hb_000832_090--Hb_000032_490 Hb_000832_090--Hb_002351_020 Hb_001347_040 Hb_001347_040 Hb_000832_090--Hb_001347_040 Hb_001377_070 Hb_001377_070 Hb_000832_090--Hb_001377_070 Hb_000959_270 Hb_000959_270 Hb_000832_090--Hb_000959_270 Hb_144787_030 Hb_144787_030 Hb_001541_260--Hb_144787_030 Hb_001541_260--Hb_000236_100 Hb_000139_250 Hb_000139_250 Hb_001541_260--Hb_000139_250 Hb_001541_260--Hb_000032_490 Hb_001541_260--Hb_000946_120 Hb_002351_020--Hb_000032_490 Hb_003029_030 Hb_003029_030 Hb_002351_020--Hb_003029_030 Hb_005489_080 Hb_005489_080 Hb_002351_020--Hb_005489_080 Hb_002686_250 Hb_002686_250 Hb_002351_020--Hb_002686_250 Hb_001408_100 Hb_001408_100 Hb_002351_020--Hb_001408_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.4393 9.91252 8.98825 2.08436 21.6042 12.3304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.81166 11.2196 9.26015 6.94048 3.80126

CAGE analysis