Hb_160233_010

Information

Type -
Description -
Location Contig160233: 5416-7491
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08800g
description POPTRDRAFT_798715; pentatricopeptide repeat-containing family protein
nr
ID XP_012078359.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
swissprot
ID Q9SUF9
description Pentatricopeptide repeat-containing protein At4g08210 OS=Arabidopsis thaliana GN=PCMP-E100 PE=3 SV=1
trembl
ID B9GUE7
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0002s08800g PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at4g08210

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14348: 6665-6833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_160233_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210 [Jatropha curcas]
2 Hb_000032_490 0.0872313581 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
3 Hb_077562_050 0.0903129574 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
4 Hb_000502_050 0.0909144768 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
5 Hb_003785_040 0.0916652575 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
6 Hb_002351_020 0.0924520845 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
7 Hb_000003_290 0.0973667479 - - hypothetical protein JCGZ_24486 [Jatropha curcas]
8 Hb_009557_040 0.1017018365 - - PREDICTED: putative protein N-methyltransferase YNL024C [Jatropha curcas]
9 Hb_000465_470 0.1017232438 - - unknown [Picea sitchensis]
10 Hb_000025_360 0.1023281033 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
11 Hb_001718_090 0.1034745282 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
12 Hb_031527_020 0.1041582468 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
13 Hb_000169_130 0.1046200427 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
14 Hb_027295_050 0.1051313413 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]
15 Hb_000946_120 0.1051829309 - - DNA binding protein, putative [Ricinus communis]
16 Hb_005188_050 0.1054158254 - - PREDICTED: DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000574_410 0.1054778732 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600 [Jatropha curcas]
18 Hb_001083_030 0.1062344009 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
19 Hb_000574_440 0.106475957 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
20 Hb_009851_070 0.1070802241 - - PREDICTED: cyclin-dependent kinase E-1 [Jatropha curcas]

Gene co-expression network

sample Hb_160233_010 Hb_160233_010 Hb_000032_490 Hb_000032_490 Hb_160233_010--Hb_000032_490 Hb_077562_050 Hb_077562_050 Hb_160233_010--Hb_077562_050 Hb_000502_050 Hb_000502_050 Hb_160233_010--Hb_000502_050 Hb_003785_040 Hb_003785_040 Hb_160233_010--Hb_003785_040 Hb_002351_020 Hb_002351_020 Hb_160233_010--Hb_002351_020 Hb_000003_290 Hb_000003_290 Hb_160233_010--Hb_000003_290 Hb_000032_490--Hb_002351_020 Hb_021422_010 Hb_021422_010 Hb_000032_490--Hb_021422_010 Hb_000946_120 Hb_000946_120 Hb_000032_490--Hb_000946_120 Hb_000832_090 Hb_000832_090 Hb_000032_490--Hb_000832_090 Hb_001541_260 Hb_001541_260 Hb_000032_490--Hb_001541_260 Hb_000365_140 Hb_000365_140 Hb_000032_490--Hb_000365_140 Hb_000289_060 Hb_000289_060 Hb_077562_050--Hb_000289_060 Hb_000538_270 Hb_000538_270 Hb_077562_050--Hb_000538_270 Hb_000010_400 Hb_000010_400 Hb_077562_050--Hb_000010_400 Hb_000453_170 Hb_000453_170 Hb_077562_050--Hb_000453_170 Hb_027295_050 Hb_027295_050 Hb_077562_050--Hb_027295_050 Hb_004155_010 Hb_004155_010 Hb_077562_050--Hb_004155_010 Hb_000502_050--Hb_003785_040 Hb_009411_010 Hb_009411_010 Hb_000502_050--Hb_009411_010 Hb_010222_050 Hb_010222_050 Hb_000502_050--Hb_010222_050 Hb_005993_050 Hb_005993_050 Hb_000502_050--Hb_005993_050 Hb_000574_440 Hb_000574_440 Hb_000502_050--Hb_000574_440 Hb_009503_030 Hb_009503_030 Hb_000502_050--Hb_009503_030 Hb_002615_090 Hb_002615_090 Hb_003785_040--Hb_002615_090 Hb_031527_020 Hb_031527_020 Hb_003785_040--Hb_031527_020 Hb_004128_050 Hb_004128_050 Hb_003785_040--Hb_004128_050 Hb_003785_040--Hb_009503_030 Hb_000395_130 Hb_000395_130 Hb_003785_040--Hb_000395_130 Hb_000092_020 Hb_000092_020 Hb_003785_040--Hb_000092_020 Hb_003029_030 Hb_003029_030 Hb_002351_020--Hb_003029_030 Hb_002351_020--Hb_000832_090 Hb_005489_080 Hb_005489_080 Hb_002351_020--Hb_005489_080 Hb_002686_250 Hb_002686_250 Hb_002351_020--Hb_002686_250 Hb_001408_100 Hb_001408_100 Hb_002351_020--Hb_001408_100 Hb_000003_290--Hb_009503_030 Hb_000003_290--Hb_000032_490 Hb_003018_130 Hb_003018_130 Hb_000003_290--Hb_003018_130 Hb_000003_290--Hb_000574_440 Hb_002367_130 Hb_002367_130 Hb_000003_290--Hb_002367_130 Hb_000107_400 Hb_000107_400 Hb_000003_290--Hb_000107_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43144 1.77985 1.11854 0.382925 2.1734 1.51671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.822908 1.22684 1.52016 0.718327 0.829131

CAGE analysis