Hb_008566_020

Information

Type -
Description -
Location Contig8566: 35237-39944
Sequence    

Annotation

kegg
ID rcu:RCOM_1430330
description sodium/hydrogen exchanger, putative
nr
ID XP_002512334.1
description sodium/hydrogen exchanger, putative [Ricinus communis]
swissprot
ID Q84WG1
description Sodium/hydrogen exchanger 3 OS=Arabidopsis thaliana GN=NHX3 PE=2 SV=2
trembl
ID B9RF15
description Sodium/hydrogen exchanger OS=Ricinus communis GN=RCOM_1430330 PE=3 SV=1
Gene Ontology
ID GO:0005774
description sodium hydrogen exchanger 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008566_020 0.0 - - sodium/hydrogen exchanger, putative [Ricinus communis]
2 Hb_000608_420 0.1394321266 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
3 Hb_006153_120 0.1497371147 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
4 Hb_002272_090 0.1611427151 - - RING/U-box superfamily protein [Theobroma cacao]
5 Hb_000101_170 0.1629056888 - - -
6 Hb_154826_010 0.1667042196 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_000189_640 0.1718345939 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
8 Hb_004242_080 0.1727575416 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
9 Hb_011828_020 0.1745915096 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
10 Hb_000617_020 0.1766180191 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
11 Hb_002835_410 0.1775238618 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
12 Hb_000617_260 0.178196336 rubber biosynthesis Gene Name: SRPP2 small rubber particle protein [Hevea brasiliensis]
13 Hb_000184_050 0.1783170063 - - NOI, putative [Ricinus communis]
14 Hb_000590_100 0.1785176688 - - -
15 Hb_098315_120 0.1789179723 - - -
16 Hb_130291_010 0.1792325726 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
17 Hb_000500_090 0.1799261753 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
18 Hb_000414_070 0.1810825475 - - -
19 Hb_003683_040 0.1815612168 - - unnamed protein product [Coffea canephora]
20 Hb_000707_030 0.1837297733 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]

Gene co-expression network

sample Hb_008566_020 Hb_008566_020 Hb_000608_420 Hb_000608_420 Hb_008566_020--Hb_000608_420 Hb_006153_120 Hb_006153_120 Hb_008566_020--Hb_006153_120 Hb_002272_090 Hb_002272_090 Hb_008566_020--Hb_002272_090 Hb_000101_170 Hb_000101_170 Hb_008566_020--Hb_000101_170 Hb_154826_010 Hb_154826_010 Hb_008566_020--Hb_154826_010 Hb_000189_640 Hb_000189_640 Hb_008566_020--Hb_000189_640 Hb_001881_020 Hb_001881_020 Hb_000608_420--Hb_001881_020 Hb_000865_070 Hb_000865_070 Hb_000608_420--Hb_000865_070 Hb_000091_090 Hb_000091_090 Hb_000608_420--Hb_000091_090 Hb_011828_020 Hb_011828_020 Hb_000608_420--Hb_011828_020 Hb_004116_040 Hb_004116_040 Hb_000608_420--Hb_004116_040 Hb_000086_570 Hb_000086_570 Hb_000608_420--Hb_000086_570 Hb_000179_050 Hb_000179_050 Hb_006153_120--Hb_000179_050 Hb_000671_150 Hb_000671_150 Hb_006153_120--Hb_000671_150 Hb_006153_120--Hb_000086_570 Hb_100506_010 Hb_100506_010 Hb_006153_120--Hb_100506_010 Hb_006153_120--Hb_001881_020 Hb_000089_160 Hb_000089_160 Hb_006153_120--Hb_000089_160 Hb_145084_010 Hb_145084_010 Hb_002272_090--Hb_145084_010 Hb_000329_250 Hb_000329_250 Hb_002272_090--Hb_000329_250 Hb_007181_070 Hb_007181_070 Hb_002272_090--Hb_007181_070 Hb_000742_110 Hb_000742_110 Hb_002272_090--Hb_000742_110 Hb_010883_070 Hb_010883_070 Hb_002272_090--Hb_010883_070 Hb_000318_380 Hb_000318_380 Hb_000101_170--Hb_000318_380 Hb_000617_020 Hb_000617_020 Hb_000101_170--Hb_000617_020 Hb_000152_430 Hb_000152_430 Hb_000101_170--Hb_000152_430 Hb_003125_040 Hb_003125_040 Hb_000101_170--Hb_003125_040 Hb_060809_010 Hb_060809_010 Hb_000101_170--Hb_060809_010 Hb_000317_430 Hb_000317_430 Hb_000101_170--Hb_000317_430 Hb_002471_150 Hb_002471_150 Hb_154826_010--Hb_002471_150 Hb_000227_230 Hb_000227_230 Hb_154826_010--Hb_000227_230 Hb_003683_040 Hb_003683_040 Hb_154826_010--Hb_003683_040 Hb_004800_070 Hb_004800_070 Hb_154826_010--Hb_004800_070 Hb_000009_460 Hb_000009_460 Hb_154826_010--Hb_000009_460 Hb_009793_010 Hb_009793_010 Hb_154826_010--Hb_009793_010 Hb_002842_020 Hb_002842_020 Hb_000189_640--Hb_002842_020 Hb_003893_010 Hb_003893_010 Hb_000189_640--Hb_003893_010 Hb_002045_130 Hb_002045_130 Hb_000189_640--Hb_002045_130 Hb_000617_260 Hb_000617_260 Hb_000189_640--Hb_000617_260 Hb_000291_110 Hb_000291_110 Hb_000189_640--Hb_000291_110 Hb_000602_010 Hb_000602_010 Hb_000189_640--Hb_000602_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.133704 0.117465 0.0211036 0.212666 0.402064 0.417047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.515931 0.507117 0.368059 0.410048 0

CAGE analysis