Hb_006775_090

Information

Type -
Description -
Location Contig6775: 63031-75677
Sequence    

Annotation

kegg
ID rcu:RCOM_1253000
description trehalose-6-phosphate synthase, putative (EC:2.4.1.15 3.1.3.12)
nr
ID XP_002522296.1
description trehalose-6-phosphate synthase, putative [Ricinus communis]
swissprot
ID Q9SYM4
description Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 OS=Arabidopsis thaliana GN=TPS1 PE=1 SV=1
trembl
ID B9S8H7
description Trehalose-6-phosphate synthase, putative OS=Ricinus communis GN=RCOM_1253000 PE=4 SV=1
Gene Ontology
ID GO:0003825
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006775_090 0.0 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
2 Hb_000261_080 0.1378385684 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
3 Hb_174865_030 0.1389115846 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
4 Hb_171284_010 0.1474998197 - - -
5 Hb_000462_130 0.1494244343 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
6 Hb_000698_030 0.1527637774 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
7 Hb_000023_230 0.1536617872 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
8 Hb_002150_080 0.1539612876 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
9 Hb_029866_060 0.1542241573 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
10 Hb_007101_150 0.1556407122 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
11 Hb_001534_050 0.1557703576 - - PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
12 Hb_001379_060 0.1591208716 - - PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
13 Hb_009265_090 0.1593191234 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
14 Hb_001235_190 0.1605104537 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
15 Hb_002284_010 0.1605772425 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000025_230 0.1619414862 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
17 Hb_001257_080 0.1622438237 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007317_150 0.1629421722 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
19 Hb_001442_020 0.1644789624 - - unknown [Populus trichocarpa]
20 Hb_007741_050 0.1650306171 - - vesicle-associated membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006775_090 Hb_006775_090 Hb_000261_080 Hb_000261_080 Hb_006775_090--Hb_000261_080 Hb_174865_030 Hb_174865_030 Hb_006775_090--Hb_174865_030 Hb_171284_010 Hb_171284_010 Hb_006775_090--Hb_171284_010 Hb_000462_130 Hb_000462_130 Hb_006775_090--Hb_000462_130 Hb_000698_030 Hb_000698_030 Hb_006775_090--Hb_000698_030 Hb_000023_230 Hb_000023_230 Hb_006775_090--Hb_000023_230 Hb_002217_050 Hb_002217_050 Hb_000261_080--Hb_002217_050 Hb_000059_360 Hb_000059_360 Hb_000261_080--Hb_000059_360 Hb_004586_320 Hb_004586_320 Hb_000261_080--Hb_004586_320 Hb_004375_140 Hb_004375_140 Hb_000261_080--Hb_004375_140 Hb_003077_040 Hb_003077_040 Hb_000261_080--Hb_003077_040 Hb_000103_010 Hb_000103_010 Hb_000261_080--Hb_000103_010 Hb_000987_120 Hb_000987_120 Hb_174865_030--Hb_000987_120 Hb_001722_100 Hb_001722_100 Hb_174865_030--Hb_001722_100 Hb_002540_030 Hb_002540_030 Hb_174865_030--Hb_002540_030 Hb_000446_030 Hb_000446_030 Hb_174865_030--Hb_000446_030 Hb_001235_190 Hb_001235_190 Hb_174865_030--Hb_001235_190 Hb_000522_080 Hb_000522_080 Hb_174865_030--Hb_000522_080 Hb_001205_070 Hb_001205_070 Hb_171284_010--Hb_001205_070 Hb_022216_020 Hb_022216_020 Hb_171284_010--Hb_022216_020 Hb_000445_180 Hb_000445_180 Hb_171284_010--Hb_000445_180 Hb_000621_080 Hb_000621_080 Hb_171284_010--Hb_000621_080 Hb_018790_060 Hb_018790_060 Hb_171284_010--Hb_018790_060 Hb_000061_370 Hb_000061_370 Hb_171284_010--Hb_000061_370 Hb_001534_050 Hb_001534_050 Hb_000462_130--Hb_001534_050 Hb_004453_170 Hb_004453_170 Hb_000462_130--Hb_004453_170 Hb_001832_060 Hb_001832_060 Hb_000462_130--Hb_001832_060 Hb_028995_040 Hb_028995_040 Hb_000462_130--Hb_028995_040 Hb_000462_130--Hb_000698_030 Hb_003078_040 Hb_003078_040 Hb_000462_130--Hb_003078_040 Hb_000698_030--Hb_001832_060 Hb_000698_030--Hb_001235_190 Hb_000866_270 Hb_000866_270 Hb_000698_030--Hb_000866_270 Hb_000698_030--Hb_028995_040 Hb_001269_630 Hb_001269_630 Hb_000698_030--Hb_001269_630 Hb_023226_040 Hb_023226_040 Hb_000023_230--Hb_023226_040 Hb_001257_080 Hb_001257_080 Hb_000023_230--Hb_001257_080 Hb_003018_120 Hb_003018_120 Hb_000023_230--Hb_003018_120 Hb_002529_100 Hb_002529_100 Hb_000023_230--Hb_002529_100 Hb_004657_050 Hb_004657_050 Hb_000023_230--Hb_004657_050 Hb_004204_120 Hb_004204_120 Hb_000023_230--Hb_004204_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.29512 0.256576 0.268568 0.0617919 0.253555 0.213039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.549265 0.595773 0.335073 0.157553 0

CAGE analysis