Hb_006501_120

Information

Type -
Description -
Location Contig6501: 105235-108880
Sequence    

Annotation

kegg
ID rcu:RCOM_1049910
description hypothetical protein
nr
ID KDP33807.1
description hypothetical protein JCGZ_07378 [Jatropha curcas]
swissprot
ID Q9SPL2
description E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1
trembl
ID A0A067KCF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07378 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006501_120 0.0 - - hypothetical protein JCGZ_07378 [Jatropha curcas]
2 Hb_005000_220 0.1325017771 - - gulonolactone oxidase, putative [Ricinus communis]
3 Hb_001951_090 0.1457763385 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_000322_200 0.1501161462 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
5 Hb_002400_250 0.1562361715 - - amino acid binding protein, putative [Ricinus communis]
6 Hb_001953_130 0.1576365873 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
7 Hb_000116_390 0.1588773428 - - Mlo protein [Hevea brasiliensis]
8 Hb_002917_030 0.1606202754 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
9 Hb_000300_570 0.1648203389 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
10 Hb_012053_030 0.1686787524 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
11 Hb_186298_010 0.1726537102 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_001424_080 0.1727964094 - - PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
13 Hb_126077_020 0.1732181599 - - Kinase family protein with leucine-rich repeat domain [Theobroma cacao]
14 Hb_000265_010 0.1743115993 - - amino acid transporter, putative [Ricinus communis]
15 Hb_008225_100 0.1748514989 - - -
16 Hb_002917_020 0.1821144053 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
17 Hb_004931_060 0.1841481763 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
18 Hb_006106_020 0.1851670715 - - ring finger protein, putative [Ricinus communis]
19 Hb_034342_010 0.1864206313 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001157_150 0.1880890391 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]

Gene co-expression network

sample Hb_006501_120 Hb_006501_120 Hb_005000_220 Hb_005000_220 Hb_006501_120--Hb_005000_220 Hb_001951_090 Hb_001951_090 Hb_006501_120--Hb_001951_090 Hb_000322_200 Hb_000322_200 Hb_006501_120--Hb_000322_200 Hb_002400_250 Hb_002400_250 Hb_006501_120--Hb_002400_250 Hb_001953_130 Hb_001953_130 Hb_006501_120--Hb_001953_130 Hb_000116_390 Hb_000116_390 Hb_006501_120--Hb_000116_390 Hb_017987_040 Hb_017987_040 Hb_005000_220--Hb_017987_040 Hb_005000_220--Hb_000322_200 Hb_007666_040 Hb_007666_040 Hb_005000_220--Hb_007666_040 Hb_001489_030 Hb_001489_030 Hb_005000_220--Hb_001489_030 Hb_006106_020 Hb_006106_020 Hb_005000_220--Hb_006106_020 Hb_002917_030 Hb_002917_030 Hb_005000_220--Hb_002917_030 Hb_001952_110 Hb_001952_110 Hb_001951_090--Hb_001952_110 Hb_002917_020 Hb_002917_020 Hb_001951_090--Hb_002917_020 Hb_008020_010 Hb_008020_010 Hb_001951_090--Hb_008020_010 Hb_000917_150 Hb_000917_150 Hb_001951_090--Hb_000917_150 Hb_001951_090--Hb_002917_030 Hb_012019_020 Hb_012019_020 Hb_001951_090--Hb_012019_020 Hb_003117_060 Hb_003117_060 Hb_000322_200--Hb_003117_060 Hb_106969_010 Hb_106969_010 Hb_000322_200--Hb_106969_010 Hb_000322_200--Hb_007666_040 Hb_000322_200--Hb_001953_130 Hb_000322_200--Hb_000116_390 Hb_000462_020 Hb_000462_020 Hb_002400_250--Hb_000462_020 Hb_015912_010 Hb_015912_010 Hb_002400_250--Hb_015912_010 Hb_001424_080 Hb_001424_080 Hb_002400_250--Hb_001424_080 Hb_001663_100 Hb_001663_100 Hb_002400_250--Hb_001663_100 Hb_004931_060 Hb_004931_060 Hb_002400_250--Hb_004931_060 Hb_186298_010 Hb_186298_010 Hb_002400_250--Hb_186298_010 Hb_001953_130--Hb_000116_390 Hb_011909_030 Hb_011909_030 Hb_001953_130--Hb_011909_030 Hb_003253_060 Hb_003253_060 Hb_001953_130--Hb_003253_060 Hb_000031_130 Hb_000031_130 Hb_001953_130--Hb_000031_130 Hb_001953_130--Hb_106969_010 Hb_012053_030 Hb_012053_030 Hb_001953_130--Hb_012053_030 Hb_000116_390--Hb_000031_130 Hb_001376_040 Hb_001376_040 Hb_000116_390--Hb_001376_040 Hb_001114_210 Hb_001114_210 Hb_000116_390--Hb_001114_210 Hb_008616_020 Hb_008616_020 Hb_000116_390--Hb_008616_020 Hb_000185_060 Hb_000185_060 Hb_000116_390--Hb_000185_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.900295 0.0950566 0.0842708 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0759715 0 0.870866 0

CAGE analysis