Hb_005657_020

Information

Type -
Description -
Location Contig5657: 44059-50041
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005657_020 0.0 - - -
2 Hb_002045_270 0.1934897177 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
3 Hb_001195_330 0.1965408415 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006189_010 0.1969857856 - - -
5 Hb_169325_010 0.1994556621 - - PREDICTED: uncharacterized protein LOC103699787, partial [Phoenix dactylifera]
6 Hb_004920_040 0.2039444406 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
7 Hb_180333_010 0.2092763215 - - -
8 Hb_000016_100 0.2099546851 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
9 Hb_004607_150 0.2106061359 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
10 Hb_001186_060 0.2116783223 - - -
11 Hb_019253_020 0.2170913468 - - PREDICTED: uncharacterized protein LOC105647727 [Jatropha curcas]
12 Hb_009393_080 0.2180731062 - - plant organelle RNA recognition domain protein [Medicago truncatula]
13 Hb_145979_010 0.2186282583 - - PREDICTED: uncharacterized protein LOC105172316 [Sesamum indicum]
14 Hb_000659_030 0.2191299289 - - pollen Ole e 1 allergen and extensin family protein, partial [Manihot esculenta]
15 Hb_006775_080 0.219749935 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
16 Hb_001073_070 0.2198198409 - - PREDICTED: uncharacterized protein LOC105644546 isoform X1 [Jatropha curcas]
17 Hb_006198_110 0.2200565052 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
18 Hb_000085_270 0.2213113459 - - PREDICTED: pirin-like protein [Malus domestica]
19 Hb_001789_210 0.2225131202 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
20 Hb_011472_040 0.2225877607 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]

Gene co-expression network

sample Hb_005657_020 Hb_005657_020 Hb_002045_270 Hb_002045_270 Hb_005657_020--Hb_002045_270 Hb_001195_330 Hb_001195_330 Hb_005657_020--Hb_001195_330 Hb_006189_010 Hb_006189_010 Hb_005657_020--Hb_006189_010 Hb_169325_010 Hb_169325_010 Hb_005657_020--Hb_169325_010 Hb_004920_040 Hb_004920_040 Hb_005657_020--Hb_004920_040 Hb_180333_010 Hb_180333_010 Hb_005657_020--Hb_180333_010 Hb_000300_380 Hb_000300_380 Hb_002045_270--Hb_000300_380 Hb_000375_310 Hb_000375_310 Hb_002045_270--Hb_000375_310 Hb_000331_310 Hb_000331_310 Hb_002045_270--Hb_000331_310 Hb_000659_030 Hb_000659_030 Hb_002045_270--Hb_000659_030 Hb_006452_190 Hb_006452_190 Hb_002045_270--Hb_006452_190 Hb_006198_110 Hb_006198_110 Hb_001195_330--Hb_006198_110 Hb_000915_160 Hb_000915_160 Hb_001195_330--Hb_000915_160 Hb_004751_020 Hb_004751_020 Hb_001195_330--Hb_004751_020 Hb_029879_110 Hb_029879_110 Hb_001195_330--Hb_029879_110 Hb_001766_110 Hb_001766_110 Hb_001195_330--Hb_001766_110 Hb_003185_080 Hb_003185_080 Hb_001195_330--Hb_003185_080 Hb_084934_010 Hb_084934_010 Hb_006189_010--Hb_084934_010 Hb_006189_010--Hb_180333_010 Hb_011472_040 Hb_011472_040 Hb_006189_010--Hb_011472_040 Hb_004607_150 Hb_004607_150 Hb_006189_010--Hb_004607_150 Hb_001186_060 Hb_001186_060 Hb_006189_010--Hb_001186_060 Hb_157854_010 Hb_157854_010 Hb_006189_010--Hb_157854_010 Hb_169325_010--Hb_004607_150 Hb_000261_490 Hb_000261_490 Hb_169325_010--Hb_000261_490 Hb_000483_350 Hb_000483_350 Hb_169325_010--Hb_000483_350 Hb_000042_030 Hb_000042_030 Hb_169325_010--Hb_000042_030 Hb_169325_010--Hb_180333_010 Hb_017987_070 Hb_017987_070 Hb_169325_010--Hb_017987_070 Hb_002762_060 Hb_002762_060 Hb_004920_040--Hb_002762_060 Hb_024835_030 Hb_024835_030 Hb_004920_040--Hb_024835_030 Hb_001138_050 Hb_001138_050 Hb_004920_040--Hb_001138_050 Hb_004012_010 Hb_004012_010 Hb_004920_040--Hb_004012_010 Hb_006775_080 Hb_006775_080 Hb_004920_040--Hb_006775_080 Hb_004221_010 Hb_004221_010 Hb_004920_040--Hb_004221_010 Hb_180333_010--Hb_004607_150 Hb_003185_020 Hb_003185_020 Hb_180333_010--Hb_003185_020 Hb_003106_070 Hb_003106_070 Hb_180333_010--Hb_003106_070 Hb_180333_010--Hb_004012_010 Hb_000085_270 Hb_000085_270 Hb_180333_010--Hb_000085_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.350775 0.283802 0 0 0.30837 0.19697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.360932 0.425556 0.125376 0.17378 0.138855

CAGE analysis