Hb_005488_050

Information

Type -
Description -
Location Contig5488: 58056-64893
Sequence    

Annotation

kegg
ID csv:101212001
description uncharacterized LOC101212001
nr
ID XP_011656225.1
description PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis sativus]
swissprot
ID P04146
description Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3
trembl
ID A5BWH6
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019049 PE=4 SV=1
Gene Ontology
ID GO:0005488
description cysteine-rich rlk (receptor-like protein kinase)

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005488_050 0.0 - - PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis sativus]
2 Hb_000268_090 0.2120289206 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
3 Hb_000933_150 0.2236365788 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
4 Hb_000934_200 0.2270474544 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
5 Hb_009111_040 0.2298947557 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
6 Hb_001014_010 0.2300407298 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
7 Hb_000270_360 0.2307393154 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
8 Hb_006096_040 0.2324814833 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
9 Hb_004242_060 0.2378420002 - - PREDICTED: nicotinamidase 2-like [Jatropha curcas]
10 Hb_000705_300 0.2391979891 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
11 Hb_000789_090 0.2397512853 - - hypothetical protein 17 [Hevea brasiliensis]
12 Hb_004046_040 0.2402309486 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]
13 Hb_000699_130 0.2404434509 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000540_150 0.2425349198 - - PREDICTED: uncharacterized protein YKR070W [Jatropha curcas]
15 Hb_003751_060 0.2442558318 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
16 Hb_011609_050 0.2448560302 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
17 Hb_003966_040 0.2452028177 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
18 Hb_007017_060 0.2460663555 - - PREDICTED: 5-formyltetrahydrofolate cyclo-ligase, mitochondrial-like [Jatropha curcas]
19 Hb_016461_010 0.2471973385 - - PREDICTED: proline synthase co-transcribed bacterial homolog protein [Jatropha curcas]
20 Hb_028347_010 0.2478259365 - - -

Gene co-expression network

sample Hb_005488_050 Hb_005488_050 Hb_000268_090 Hb_000268_090 Hb_005488_050--Hb_000268_090 Hb_000933_150 Hb_000933_150 Hb_005488_050--Hb_000933_150 Hb_000934_200 Hb_000934_200 Hb_005488_050--Hb_000934_200 Hb_009111_040 Hb_009111_040 Hb_005488_050--Hb_009111_040 Hb_001014_010 Hb_001014_010 Hb_005488_050--Hb_001014_010 Hb_000270_360 Hb_000270_360 Hb_005488_050--Hb_000270_360 Hb_021443_070 Hb_021443_070 Hb_000268_090--Hb_021443_070 Hb_005333_040 Hb_005333_040 Hb_000268_090--Hb_005333_040 Hb_000268_090--Hb_000270_360 Hb_005928_060 Hb_005928_060 Hb_000268_090--Hb_005928_060 Hb_003086_070 Hb_003086_070 Hb_000268_090--Hb_003086_070 Hb_000270_840 Hb_000270_840 Hb_000268_090--Hb_000270_840 Hb_008887_050 Hb_008887_050 Hb_000933_150--Hb_008887_050 Hb_000676_050 Hb_000676_050 Hb_000933_150--Hb_000676_050 Hb_006096_040 Hb_006096_040 Hb_000933_150--Hb_006096_040 Hb_001484_060 Hb_001484_060 Hb_000933_150--Hb_001484_060 Hb_010968_010 Hb_010968_010 Hb_000933_150--Hb_010968_010 Hb_031527_100 Hb_031527_100 Hb_000933_150--Hb_031527_100 Hb_006570_020 Hb_006570_020 Hb_000934_200--Hb_006570_020 Hb_029921_010 Hb_029921_010 Hb_000934_200--Hb_029921_010 Hb_000438_170 Hb_000438_170 Hb_000934_200--Hb_000438_170 Hb_000788_130 Hb_000788_130 Hb_000934_200--Hb_000788_130 Hb_005271_070 Hb_005271_070 Hb_000934_200--Hb_005271_070 Hb_003029_030 Hb_003029_030 Hb_009111_040--Hb_003029_030 Hb_000313_300 Hb_000313_300 Hb_009111_040--Hb_000313_300 Hb_000661_160 Hb_000661_160 Hb_009111_040--Hb_000661_160 Hb_001357_380 Hb_001357_380 Hb_009111_040--Hb_001357_380 Hb_000261_110 Hb_000261_110 Hb_009111_040--Hb_000261_110 Hb_006824_060 Hb_006824_060 Hb_009111_040--Hb_006824_060 Hb_012305_070 Hb_012305_070 Hb_001014_010--Hb_012305_070 Hb_000803_300 Hb_000803_300 Hb_001014_010--Hb_000803_300 Hb_031939_010 Hb_031939_010 Hb_001014_010--Hb_031939_010 Hb_000699_130 Hb_000699_130 Hb_001014_010--Hb_000699_130 Hb_001014_010--Hb_008887_050 Hb_000085_060 Hb_000085_060 Hb_001014_010--Hb_000085_060 Hb_000270_360--Hb_000270_840 Hb_002942_020 Hb_002942_020 Hb_000270_360--Hb_002942_020 Hb_006501_150 Hb_006501_150 Hb_000270_360--Hb_006501_150 Hb_027892_060 Hb_027892_060 Hb_000270_360--Hb_027892_060 Hb_007441_340 Hb_007441_340 Hb_000270_360--Hb_007441_340 Hb_012675_090 Hb_012675_090 Hb_000270_360--Hb_012675_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110742 0.107953 0.149277 0 0.313444 0.133798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.33713 0.0795658 0.0496977 0.0211931 0.0553254

CAGE analysis