Hb_004846_190

Information

Type -
Description -
Location Contig4846: 238177-238719
Sequence    

Annotation

kegg
ID pop:POPTR_0001s03430g
description hypothetical protein
nr
ID XP_006368491.1
description hypothetical protein POPTR_0001s03430g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GNG0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s03430g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44926: 238200-238415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004846_190 0.0 - - hypothetical protein POPTR_0001s03430g [Populus trichocarpa]
2 Hb_050160_010 0.129832235 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
3 Hb_031984_020 0.153001135 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000077_250 0.1533736301 - - hypothetical protein JCGZ_25802 [Jatropha curcas]
5 Hb_000227_360 0.1561622018 - - PREDICTED: mavicyanin [Jatropha curcas]
6 Hb_005440_040 0.1594164451 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
7 Hb_132381_010 0.164042202 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
8 Hb_001357_290 0.169213766 - - PREDICTED: uncharacterized protein LOC105632986 [Jatropha curcas]
9 Hb_108090_010 0.171599838 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002471_130 0.1716359446 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
11 Hb_012055_070 0.1731798224 - - calcium ion binding protein, putative [Ricinus communis]
12 Hb_003858_010 0.1748000958 - - xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]
13 Hb_003177_040 0.1758855449 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
14 Hb_061700_010 0.1780021342 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
15 Hb_000421_040 0.1786559805 - - Peptide transporter, putative [Ricinus communis]
16 Hb_006922_120 0.1786652886 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
17 Hb_011344_040 0.1799575833 - - PREDICTED: 21 kDa protein [Jatropha curcas]
18 Hb_000347_060 0.1808149506 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
19 Hb_000103_440 0.1813704019 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
20 Hb_001048_010 0.1814690784 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_004846_190 Hb_004846_190 Hb_050160_010 Hb_050160_010 Hb_004846_190--Hb_050160_010 Hb_031984_020 Hb_031984_020 Hb_004846_190--Hb_031984_020 Hb_000077_250 Hb_000077_250 Hb_004846_190--Hb_000077_250 Hb_000227_360 Hb_000227_360 Hb_004846_190--Hb_000227_360 Hb_005440_040 Hb_005440_040 Hb_004846_190--Hb_005440_040 Hb_132381_010 Hb_132381_010 Hb_004846_190--Hb_132381_010 Hb_050160_010--Hb_000227_360 Hb_001357_290 Hb_001357_290 Hb_050160_010--Hb_001357_290 Hb_001456_030 Hb_001456_030 Hb_050160_010--Hb_001456_030 Hb_003376_060 Hb_003376_060 Hb_050160_010--Hb_003376_060 Hb_000130_250 Hb_000130_250 Hb_050160_010--Hb_000130_250 Hb_001269_160 Hb_001269_160 Hb_050160_010--Hb_001269_160 Hb_002471_130 Hb_002471_130 Hb_031984_020--Hb_002471_130 Hb_031984_020--Hb_132381_010 Hb_009151_010 Hb_009151_010 Hb_031984_020--Hb_009151_010 Hb_007113_060 Hb_007113_060 Hb_031984_020--Hb_007113_060 Hb_006922_120 Hb_006922_120 Hb_031984_020--Hb_006922_120 Hb_053264_010 Hb_053264_010 Hb_031984_020--Hb_053264_010 Hb_002997_150 Hb_002997_150 Hb_000077_250--Hb_002997_150 Hb_020375_010 Hb_020375_010 Hb_000077_250--Hb_020375_010 Hb_004650_120 Hb_004650_120 Hb_000077_250--Hb_004650_120 Hb_007185_050 Hb_007185_050 Hb_000077_250--Hb_007185_050 Hb_004020_030 Hb_004020_030 Hb_000077_250--Hb_004020_030 Hb_009070_020 Hb_009070_020 Hb_000077_250--Hb_009070_020 Hb_108090_010 Hb_108090_010 Hb_000227_360--Hb_108090_010 Hb_000227_360--Hb_005440_040 Hb_003858_010 Hb_003858_010 Hb_000227_360--Hb_003858_010 Hb_000227_360--Hb_001456_030 Hb_011344_040 Hb_011344_040 Hb_000227_360--Hb_011344_040 Hb_000227_360--Hb_001357_290 Hb_005440_040--Hb_007113_060 Hb_005440_040--Hb_006922_120 Hb_005440_040--Hb_003858_010 Hb_000531_030 Hb_000531_030 Hb_005440_040--Hb_000531_030 Hb_005440_040--Hb_108090_010 Hb_015175_070 Hb_015175_070 Hb_132381_010--Hb_015175_070 Hb_132381_010--Hb_000531_030 Hb_132381_010--Hb_002471_130 Hb_005295_030 Hb_005295_030 Hb_132381_010--Hb_005295_030 Hb_004899_230 Hb_004899_230 Hb_132381_010--Hb_004899_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0872779 1.13207 5.3603 0.471073 0.0902543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.82214

CAGE analysis