Hb_050160_010

Information

Type -
Description -
Location Contig50160: 2401-3540
Sequence    

Annotation

kegg
ID vvi:100258339
description MATH domain and coiled-coil domain-containing protein At2g05420-like
nr
ID KDP40935.1
description hypothetical protein JCGZ_24934 [Jatropha curcas]
swissprot
ID Q9SHT2
description MATH domain and coiled-coil domain-containing protein At2g05420 OS=Arabidopsis thaliana GN=At2g05420 PE=3 SV=1
trembl
ID A0A067L8V8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24934 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_050160_010 0.0 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
2 Hb_000227_360 0.0996455628 - - PREDICTED: mavicyanin [Jatropha curcas]
3 Hb_001357_290 0.099655467 - - PREDICTED: uncharacterized protein LOC105632986 [Jatropha curcas]
4 Hb_001456_030 0.1050800141 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
5 Hb_003376_060 0.107648334 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
6 Hb_000130_250 0.1090766006 - - PREDICTED: protein trichome birefringence-like 31 [Jatropha curcas]
7 Hb_001269_160 0.1092579817 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000964_080 0.1096164941 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
9 Hb_000414_090 0.1099052913 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011224_070 0.110345229 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
11 Hb_000633_030 0.1158791846 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
12 Hb_000347_060 0.118264722 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
13 Hb_000103_440 0.1189147122 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
14 Hb_009476_080 0.1192274421 - - BnaA03g18920D [Brassica napus]
15 Hb_000413_030 0.1222704695 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
16 Hb_011344_040 0.1226306285 - - PREDICTED: 21 kDa protein [Jatropha curcas]
17 Hb_001104_060 0.1230848581 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
18 Hb_004225_120 0.1233222341 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
19 Hb_001511_220 0.1253499693 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
20 Hb_003747_160 0.1278505326 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_050160_010 Hb_050160_010 Hb_000227_360 Hb_000227_360 Hb_050160_010--Hb_000227_360 Hb_001357_290 Hb_001357_290 Hb_050160_010--Hb_001357_290 Hb_001456_030 Hb_001456_030 Hb_050160_010--Hb_001456_030 Hb_003376_060 Hb_003376_060 Hb_050160_010--Hb_003376_060 Hb_000130_250 Hb_000130_250 Hb_050160_010--Hb_000130_250 Hb_001269_160 Hb_001269_160 Hb_050160_010--Hb_001269_160 Hb_108090_010 Hb_108090_010 Hb_000227_360--Hb_108090_010 Hb_005440_040 Hb_005440_040 Hb_000227_360--Hb_005440_040 Hb_003858_010 Hb_003858_010 Hb_000227_360--Hb_003858_010 Hb_000227_360--Hb_001456_030 Hb_011344_040 Hb_011344_040 Hb_000227_360--Hb_011344_040 Hb_000227_360--Hb_001357_290 Hb_001357_290--Hb_011344_040 Hb_001357_290--Hb_000130_250 Hb_000347_060 Hb_000347_060 Hb_001357_290--Hb_000347_060 Hb_061700_010 Hb_061700_010 Hb_001357_290--Hb_061700_010 Hb_000392_350 Hb_000392_350 Hb_001357_290--Hb_000392_350 Hb_005616_020 Hb_005616_020 Hb_001456_030--Hb_005616_020 Hb_001456_030--Hb_003376_060 Hb_000462_120 Hb_000462_120 Hb_001456_030--Hb_000462_120 Hb_001104_060 Hb_001104_060 Hb_001456_030--Hb_001104_060 Hb_000964_080 Hb_000964_080 Hb_001456_030--Hb_000964_080 Hb_011224_070 Hb_011224_070 Hb_003376_060--Hb_011224_070 Hb_003376_060--Hb_005616_020 Hb_003376_060--Hb_000964_080 Hb_000413_030 Hb_000413_030 Hb_003376_060--Hb_000413_030 Hb_003747_160 Hb_003747_160 Hb_003376_060--Hb_003747_160 Hb_000130_250--Hb_061700_010 Hb_000130_250--Hb_000227_360 Hb_000130_250--Hb_011344_040 Hb_000130_250--Hb_000347_060 Hb_000130_250--Hb_003376_060 Hb_002499_030 Hb_002499_030 Hb_001269_160--Hb_002499_030 Hb_001269_160--Hb_000413_030 Hb_009476_080 Hb_009476_080 Hb_001269_160--Hb_009476_080 Hb_001269_160--Hb_011224_070 Hb_064047_020 Hb_064047_020 Hb_001269_160--Hb_064047_020 Hb_001269_160--Hb_003747_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0267548 0.165547 1.33155 0.0266653 0.023454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0193706 0.679059

CAGE analysis