Hb_004814_010

Information

Type -
Description -
Location Contig4814: 47287-52105
Sequence    

Annotation

kegg
ID rcu:RCOM_0700480
description hypothetical protein
nr
ID XP_012071474.1
description PREDICTED: uncharacterized protein LOC105633486 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3J3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04007 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44753: 47452-52073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004814_010 0.0 - - PREDICTED: uncharacterized protein LOC105633486 [Jatropha curcas]
2 Hb_001754_080 0.1410380231 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
3 Hb_001511_260 0.1436695452 - - tryptophan biosynthesis protein, putative [Ricinus communis]
4 Hb_001863_130 0.1443568925 - - hypothetical protein ZEAMMB73_433257, partial [Zea mays]
5 Hb_002314_010 0.1490226731 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
6 Hb_005460_060 0.1490840214 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
7 Hb_119316_010 0.1491209085 - - tryptophan biosynthesis protein, putative [Ricinus communis]
8 Hb_000008_400 0.1498191508 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
9 Hb_145880_020 0.1505246229 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
10 Hb_005144_010 0.1505973258 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
11 Hb_002303_060 0.1531462465 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000110_120 0.153432131 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
13 Hb_000107_300 0.156246223 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
14 Hb_012340_050 0.1572012498 - - PREDICTED: actin-related protein 5 [Jatropha curcas]
15 Hb_000638_170 0.1585098963 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
16 Hb_000419_070 0.1607153203 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
17 Hb_001053_140 0.1618296484 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
18 Hb_000292_060 0.1638520159 - - transporter, putative [Ricinus communis]
19 Hb_003582_070 0.1643394423 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000479_160 0.1644466293 - - Membrane-anchored ubiquitin-fold protein 1 precursor isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_004814_010 Hb_004814_010 Hb_001754_080 Hb_001754_080 Hb_004814_010--Hb_001754_080 Hb_001511_260 Hb_001511_260 Hb_004814_010--Hb_001511_260 Hb_001863_130 Hb_001863_130 Hb_004814_010--Hb_001863_130 Hb_002314_010 Hb_002314_010 Hb_004814_010--Hb_002314_010 Hb_005460_060 Hb_005460_060 Hb_004814_010--Hb_005460_060 Hb_119316_010 Hb_119316_010 Hb_004814_010--Hb_119316_010 Hb_000060_050 Hb_000060_050 Hb_001754_080--Hb_000060_050 Hb_004158_020 Hb_004158_020 Hb_001754_080--Hb_004158_020 Hb_003305_040 Hb_003305_040 Hb_001754_080--Hb_003305_040 Hb_001489_110 Hb_001489_110 Hb_001754_080--Hb_001489_110 Hb_002110_100 Hb_002110_100 Hb_001754_080--Hb_002110_100 Hb_002677_020 Hb_002677_020 Hb_001754_080--Hb_002677_020 Hb_000803_200 Hb_000803_200 Hb_001511_260--Hb_000803_200 Hb_006326_040 Hb_006326_040 Hb_001511_260--Hb_006326_040 Hb_000392_340 Hb_000392_340 Hb_001511_260--Hb_000392_340 Hb_000832_190 Hb_000832_190 Hb_001511_260--Hb_000832_190 Hb_000359_150 Hb_000359_150 Hb_001511_260--Hb_000359_150 Hb_002303_060 Hb_002303_060 Hb_001511_260--Hb_002303_060 Hb_003582_070 Hb_003582_070 Hb_001863_130--Hb_003582_070 Hb_002909_020 Hb_002909_020 Hb_001863_130--Hb_002909_020 Hb_001863_130--Hb_001511_260 Hb_001377_450 Hb_001377_450 Hb_001863_130--Hb_001377_450 Hb_001234_070 Hb_001234_070 Hb_001863_130--Hb_001234_070 Hb_010560_030 Hb_010560_030 Hb_001863_130--Hb_010560_030 Hb_000215_330 Hb_000215_330 Hb_002314_010--Hb_000215_330 Hb_000107_300 Hb_000107_300 Hb_002314_010--Hb_000107_300 Hb_002314_010--Hb_002303_060 Hb_005306_070 Hb_005306_070 Hb_002314_010--Hb_005306_070 Hb_001053_140 Hb_001053_140 Hb_002314_010--Hb_001053_140 Hb_003605_160 Hb_003605_160 Hb_002314_010--Hb_003605_160 Hb_000110_120 Hb_000110_120 Hb_005460_060--Hb_000110_120 Hb_004984_030 Hb_004984_030 Hb_005460_060--Hb_004984_030 Hb_098315_020 Hb_098315_020 Hb_005460_060--Hb_098315_020 Hb_000077_180 Hb_000077_180 Hb_005460_060--Hb_000077_180 Hb_002060_010 Hb_002060_010 Hb_005460_060--Hb_002060_010 Hb_000946_090 Hb_000946_090 Hb_005460_060--Hb_000946_090 Hb_001865_090 Hb_001865_090 Hb_119316_010--Hb_001865_090 Hb_119316_010--Hb_005460_060 Hb_119316_010--Hb_000803_200 Hb_119316_010--Hb_002303_060 Hb_166574_010 Hb_166574_010 Hb_119316_010--Hb_166574_010 Hb_000436_030 Hb_000436_030 Hb_119316_010--Hb_000436_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.5373 1.93926 10.9825 21.0997 3.08572 2.10924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.54607 19.4632 13.7332 2.99028 6.38876

CAGE analysis