Hb_003371_010

Information

Type -
Description -
Location Contig3371: 4417-5994
Sequence    

Annotation

kegg
ID rcu:RCOM_1776050
description ATP binding protein, putative
nr
ID XP_012092593.1
description PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
swissprot
ID Q9P6Q3
description Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
trembl
ID A0A067J9F1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05260 PE=3 SV=1
Gene Ontology
ID GO:0005524
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_010 0.0 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
2 Hb_000962_090 0.0960358649 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
3 Hb_001014_240 0.0961633241 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
4 Hb_000128_040 0.1030928647 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
5 Hb_000950_020 0.1032429905 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
6 Hb_015044_010 0.1053832926 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
7 Hb_003038_230 0.1072296018 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
8 Hb_001343_030 0.108407598 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
9 Hb_008195_070 0.1094754577 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_000359_050 0.1105784649 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
11 Hb_001975_120 0.1106245276 - - chlorophyll a/b binding protein type II [Glycine max]
12 Hb_002375_030 0.1123037107 - - F-box family protein [Populus trichocarpa]
13 Hb_000300_110 0.1129404728 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
14 Hb_005329_010 0.1147164898 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
15 Hb_005211_080 0.1148926042 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
16 Hb_009476_030 0.1174833542 - - fatty acid desaturase [Manihot esculenta]
17 Hb_005345_020 0.1178369881 - - Root phototropism protein, putative [Ricinus communis]
18 Hb_001675_090 0.1188459213 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
19 Hb_004920_020 0.1204396378 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
20 Hb_003937_010 0.1209031376 - - hypothetical protein JCGZ_20930 [Jatropha curcas]

Gene co-expression network

sample Hb_003371_010 Hb_003371_010 Hb_000962_090 Hb_000962_090 Hb_003371_010--Hb_000962_090 Hb_001014_240 Hb_001014_240 Hb_003371_010--Hb_001014_240 Hb_000128_040 Hb_000128_040 Hb_003371_010--Hb_000128_040 Hb_000950_020 Hb_000950_020 Hb_003371_010--Hb_000950_020 Hb_015044_010 Hb_015044_010 Hb_003371_010--Hb_015044_010 Hb_003038_230 Hb_003038_230 Hb_003371_010--Hb_003038_230 Hb_005211_080 Hb_005211_080 Hb_000962_090--Hb_005211_080 Hb_000359_050 Hb_000359_050 Hb_000962_090--Hb_000359_050 Hb_001343_030 Hb_001343_030 Hb_000962_090--Hb_001343_030 Hb_000962_090--Hb_001014_240 Hb_005329_010 Hb_005329_010 Hb_000962_090--Hb_005329_010 Hb_001006_150 Hb_001006_150 Hb_000962_090--Hb_001006_150 Hb_001014_240--Hb_015044_010 Hb_001014_240--Hb_000359_050 Hb_001014_240--Hb_000128_040 Hb_101133_030 Hb_101133_030 Hb_001014_240--Hb_101133_030 Hb_000340_280 Hb_000340_280 Hb_001014_240--Hb_000340_280 Hb_000128_040--Hb_015044_010 Hb_000128_040--Hb_101133_030 Hb_000128_040--Hb_000359_050 Hb_023344_090 Hb_023344_090 Hb_000128_040--Hb_023344_090 Hb_006267_040 Hb_006267_040 Hb_000128_040--Hb_006267_040 Hb_004920_020 Hb_004920_020 Hb_000950_020--Hb_004920_020 Hb_006970_030 Hb_006970_030 Hb_000950_020--Hb_006970_030 Hb_000711_030 Hb_000711_030 Hb_000950_020--Hb_000711_030 Hb_002235_070 Hb_002235_070 Hb_000950_020--Hb_002235_070 Hb_001159_070 Hb_001159_070 Hb_000950_020--Hb_001159_070 Hb_000544_070 Hb_000544_070 Hb_000950_020--Hb_000544_070 Hb_015044_010--Hb_006267_040 Hb_015044_010--Hb_101133_030 Hb_000866_060 Hb_000866_060 Hb_015044_010--Hb_000866_060 Hb_003937_010 Hb_003937_010 Hb_015044_010--Hb_003937_010 Hb_001266_010 Hb_001266_010 Hb_003038_230--Hb_001266_010 Hb_001975_120 Hb_001975_120 Hb_003038_230--Hb_001975_120 Hb_011013_040 Hb_011013_040 Hb_003038_230--Hb_011013_040 Hb_001424_010 Hb_001424_010 Hb_003038_230--Hb_001424_010 Hb_000697_030 Hb_000697_030 Hb_003038_230--Hb_000697_030 Hb_001159_050 Hb_001159_050 Hb_003038_230--Hb_001159_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.01608 0.0235775 0.427024 0.147886 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0184939 0.437372

CAGE analysis