Hb_002918_190

Information

Type -
Description -
Location Contig2918: 189797-190931
Sequence    

Annotation

kegg
ID tcc:TCM_029816
description hypothetical protein
nr
ID XP_007025554.1
description Uncharacterized protein TCM_029816 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GF62
description Uncharacterized protein OS=Theobroma cacao GN=TCM_029816 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30612: 190429-190624
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_190 0.0 - - Uncharacterized protein TCM_029816 [Theobroma cacao]
2 Hb_001712_080 0.2055917936 - - -
3 Hb_082195_010 0.2210503126 - - Uncharacterized protein TCM_043808 [Theobroma cacao]
4 Hb_002972_060 0.2425451043 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
5 Hb_000289_080 0.2458996593 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011200_010 0.2464675519 - - -
7 Hb_059978_010 0.2490041898 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
8 Hb_000034_090 0.2506233011 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
9 Hb_012675_080 0.2508821669 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
10 Hb_120052_010 0.2535085052 - - hypothetical protein PRUPE_ppa1027171mg [Prunus persica]
11 Hb_002016_030 0.2552085524 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000292_080 0.2569103316 - - hypothetical protein CISIN_1g034193mg [Citrus sinensis]
13 Hb_003656_150 0.2609554585 - - -
14 Hb_006995_010 0.2633828335 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
15 Hb_000981_040 0.2648113909 - - -
16 Hb_005928_070 0.2651812097 - - hypothetical protein POPTR_0002s04520g [Populus trichocarpa]
17 Hb_000085_130 0.2658234768 - - -
18 Hb_075745_010 0.2661695334 - - hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]
19 Hb_009119_010 0.2677089329 - - -
20 Hb_002079_040 0.2731578856 - - hypothetical protein VITISV_018542 [Vitis vinifera]

Gene co-expression network

sample Hb_002918_190 Hb_002918_190 Hb_001712_080 Hb_001712_080 Hb_002918_190--Hb_001712_080 Hb_082195_010 Hb_082195_010 Hb_002918_190--Hb_082195_010 Hb_002972_060 Hb_002972_060 Hb_002918_190--Hb_002972_060 Hb_000289_080 Hb_000289_080 Hb_002918_190--Hb_000289_080 Hb_011200_010 Hb_011200_010 Hb_002918_190--Hb_011200_010 Hb_059978_010 Hb_059978_010 Hb_002918_190--Hb_059978_010 Hb_005928_070 Hb_005928_070 Hb_001712_080--Hb_005928_070 Hb_001712_080--Hb_059978_010 Hb_006995_010 Hb_006995_010 Hb_001712_080--Hb_006995_010 Hb_005542_090 Hb_005542_090 Hb_001712_080--Hb_005542_090 Hb_007083_020 Hb_007083_020 Hb_001712_080--Hb_007083_020 Hb_082195_010--Hb_002972_060 Hb_000300_140 Hb_000300_140 Hb_082195_010--Hb_000300_140 Hb_068804_060 Hb_068804_060 Hb_082195_010--Hb_068804_060 Hb_007290_020 Hb_007290_020 Hb_082195_010--Hb_007290_020 Hb_007356_010 Hb_007356_010 Hb_082195_010--Hb_007356_010 Hb_163132_010 Hb_163132_010 Hb_082195_010--Hb_163132_010 Hb_009119_010 Hb_009119_010 Hb_002972_060--Hb_009119_010 Hb_008096_020 Hb_008096_020 Hb_002972_060--Hb_008096_020 Hb_005723_070 Hb_005723_070 Hb_002972_060--Hb_005723_070 Hb_005318_010 Hb_005318_010 Hb_002972_060--Hb_005318_010 Hb_002450_130 Hb_002450_130 Hb_002972_060--Hb_002450_130 Hb_000876_010 Hb_000876_010 Hb_002972_060--Hb_000876_010 Hb_000289_080--Hb_006995_010 Hb_003029_100 Hb_003029_100 Hb_000289_080--Hb_003029_100 Hb_000086_190 Hb_000086_190 Hb_000289_080--Hb_000086_190 Hb_000204_020 Hb_000204_020 Hb_000289_080--Hb_000204_020 Hb_000668_020 Hb_000668_020 Hb_000289_080--Hb_000668_020 Hb_003656_150 Hb_003656_150 Hb_000289_080--Hb_003656_150 Hb_006794_010 Hb_006794_010 Hb_011200_010--Hb_006794_010 Hb_005107_020 Hb_005107_020 Hb_011200_010--Hb_005107_020 Hb_022614_010 Hb_022614_010 Hb_011200_010--Hb_022614_010 Hb_013394_100 Hb_013394_100 Hb_011200_010--Hb_013394_100 Hb_012675_080 Hb_012675_080 Hb_011200_010--Hb_012675_080 Hb_006162_020 Hb_006162_020 Hb_011200_010--Hb_006162_020 Hb_059978_010--Hb_005928_070 Hb_021888_040 Hb_021888_040 Hb_059978_010--Hb_021888_040 Hb_059978_010--Hb_013394_100 Hb_002379_040 Hb_002379_040 Hb_059978_010--Hb_002379_040 Hb_002079_040 Hb_002079_040 Hb_059978_010--Hb_002079_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.171829 7.85797 0 8.25337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.99356 1.012 0 0.157184 0

CAGE analysis