Hb_082195_010

Information

Type -
Description -
Location Contig82195: 13-462
Sequence    

Annotation

kegg
ID tcc:TCM_043808
description hypothetical protein
nr
ID XP_007010285.1
description Uncharacterized protein TCM_043808 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FP49
description Uncharacterized protein OS=Theobroma cacao GN=TCM_043808 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_082195_010 0.0 - - Uncharacterized protein TCM_043808 [Theobroma cacao]
2 Hb_002972_060 0.1819419921 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
3 Hb_000300_140 0.1889462051 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
4 Hb_068804_060 0.1890807965 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
5 Hb_007290_020 0.1890864629 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
6 Hb_007356_010 0.1893640391 - - CTV.19 [Citrus trifoliata]
7 Hb_163132_010 0.1896856601 - - -
8 Hb_033312_110 0.1943813488 - - -
9 Hb_004907_030 0.2013379886 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
10 Hb_002918_190 0.2210503126 - - Uncharacterized protein TCM_029816 [Theobroma cacao]
11 Hb_013040_010 0.2281610076 - - hypothetical protein POPTR_0009s09690g [Populus trichocarpa]
12 Hb_002450_130 0.2305273354 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
13 Hb_009119_010 0.2322475877 - - -
14 Hb_005723_070 0.2353702431 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
15 Hb_000671_040 0.2385449425 - - -
16 Hb_001660_140 0.2408043724 - - -
17 Hb_182507_010 0.2428496023 - - -
18 Hb_005318_010 0.2453830215 - - hypothetical protein POPTR_0012s15190g, partial [Populus trichocarpa]
19 Hb_000876_010 0.246882691 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
20 Hb_094132_010 0.2535992219 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]

Gene co-expression network

sample Hb_082195_010 Hb_082195_010 Hb_002972_060 Hb_002972_060 Hb_082195_010--Hb_002972_060 Hb_000300_140 Hb_000300_140 Hb_082195_010--Hb_000300_140 Hb_068804_060 Hb_068804_060 Hb_082195_010--Hb_068804_060 Hb_007290_020 Hb_007290_020 Hb_082195_010--Hb_007290_020 Hb_007356_010 Hb_007356_010 Hb_082195_010--Hb_007356_010 Hb_163132_010 Hb_163132_010 Hb_082195_010--Hb_163132_010 Hb_009119_010 Hb_009119_010 Hb_002972_060--Hb_009119_010 Hb_008096_020 Hb_008096_020 Hb_002972_060--Hb_008096_020 Hb_005723_070 Hb_005723_070 Hb_002972_060--Hb_005723_070 Hb_005318_010 Hb_005318_010 Hb_002972_060--Hb_005318_010 Hb_002450_130 Hb_002450_130 Hb_002972_060--Hb_002450_130 Hb_000876_010 Hb_000876_010 Hb_002972_060--Hb_000876_010 Hb_000300_140--Hb_068804_060 Hb_000300_140--Hb_007290_020 Hb_000300_140--Hb_007356_010 Hb_000300_140--Hb_163132_010 Hb_033312_110 Hb_033312_110 Hb_000300_140--Hb_033312_110 Hb_004907_030 Hb_004907_030 Hb_000300_140--Hb_004907_030 Hb_068804_060--Hb_007290_020 Hb_068804_060--Hb_007356_010 Hb_068804_060--Hb_163132_010 Hb_068804_060--Hb_033312_110 Hb_068804_060--Hb_004907_030 Hb_007290_020--Hb_007356_010 Hb_007290_020--Hb_163132_010 Hb_007290_020--Hb_033312_110 Hb_007290_020--Hb_004907_030 Hb_007356_010--Hb_163132_010 Hb_007356_010--Hb_033312_110 Hb_007356_010--Hb_004907_030 Hb_163132_010--Hb_033312_110 Hb_163132_010--Hb_004907_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.2548 0 1.63074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.215811 0 0 0 0

CAGE analysis