Hb_002498_190

Information

Type -
Description -
Location Contig2498: 105627-106987
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_190 0.0 - - -
2 Hb_008277_030 0.2549334854 - - hypothetical protein CICLE_v10024419mg, partial [Citrus clementina]
3 Hb_006252_010 0.268344536 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
4 Hb_000320_320 0.271906857 - - hypothetical protein POPTR_0004s01360g [Populus trichocarpa]
5 Hb_000082_080 0.2884773932 - - putative polyol transporter protein 1 [Hevea brasiliensis]
6 Hb_006487_060 0.2892561127 - - Defective in cullin neddylation protein, putative [Ricinus communis]
7 Hb_000996_170 0.2892858183 - - unknown [Glycine max]
8 Hb_001069_020 0.2938674207 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
9 Hb_000265_130 0.2945768592 - - -
10 Hb_073559_010 0.2999654272 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
11 Hb_000176_120 0.3000220888 - - seryl-tRNA synthetase, putative [Ricinus communis]
12 Hb_000161_120 0.3064712681 - - unnamed protein product [Vitis vinifera]
13 Hb_002783_060 0.3094449652 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
14 Hb_000608_180 0.3116099214 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Tarenaya hassleriana]
15 Hb_116596_010 0.3119809316 - - PREDICTED: probable receptor-like protein kinase At5g47070-like isoform X1 [Citrus sinensis]
16 Hb_153054_010 0.3139000045 - - PREDICTED: metal tolerance protein 11-like [Populus euphratica]
17 Hb_000436_080 0.3157650278 - - unnamed protein product [Coffea canephora]
18 Hb_005167_040 0.3165387481 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
19 Hb_000042_230 0.3180052011 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
20 Hb_006487_050 0.3186081868 - - hypothetical protein PHAVU_005G049600g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_002498_190 Hb_002498_190 Hb_008277_030 Hb_008277_030 Hb_002498_190--Hb_008277_030 Hb_006252_010 Hb_006252_010 Hb_002498_190--Hb_006252_010 Hb_000320_320 Hb_000320_320 Hb_002498_190--Hb_000320_320 Hb_000082_080 Hb_000082_080 Hb_002498_190--Hb_000082_080 Hb_006487_060 Hb_006487_060 Hb_002498_190--Hb_006487_060 Hb_000996_170 Hb_000996_170 Hb_002498_190--Hb_000996_170 Hb_000265_130 Hb_000265_130 Hb_008277_030--Hb_000265_130 Hb_000261_360 Hb_000261_360 Hb_008277_030--Hb_000261_360 Hb_073559_010 Hb_073559_010 Hb_008277_030--Hb_073559_010 Hb_000204_020 Hb_000204_020 Hb_008277_030--Hb_000204_020 Hb_032531_060 Hb_032531_060 Hb_008277_030--Hb_032531_060 Hb_000248_030 Hb_000248_030 Hb_008277_030--Hb_000248_030 Hb_002023_020 Hb_002023_020 Hb_006252_010--Hb_002023_020 Hb_137403_010 Hb_137403_010 Hb_006252_010--Hb_137403_010 Hb_002197_030 Hb_002197_030 Hb_006252_010--Hb_002197_030 Hb_003656_140 Hb_003656_140 Hb_006252_010--Hb_003656_140 Hb_000364_150 Hb_000364_150 Hb_006252_010--Hb_000364_150 Hb_039253_010 Hb_039253_010 Hb_006252_010--Hb_039253_010 Hb_102156_010 Hb_102156_010 Hb_000320_320--Hb_102156_010 Hb_004143_110 Hb_004143_110 Hb_000320_320--Hb_004143_110 Hb_002272_260 Hb_002272_260 Hb_000320_320--Hb_002272_260 Hb_011174_010 Hb_011174_010 Hb_000320_320--Hb_011174_010 Hb_004502_050 Hb_004502_050 Hb_000320_320--Hb_004502_050 Hb_004235_030 Hb_004235_030 Hb_000320_320--Hb_004235_030 Hb_002154_050 Hb_002154_050 Hb_000082_080--Hb_002154_050 Hb_005167_040 Hb_005167_040 Hb_000082_080--Hb_005167_040 Hb_004659_120 Hb_004659_120 Hb_000082_080--Hb_004659_120 Hb_005539_290 Hb_005539_290 Hb_000082_080--Hb_005539_290 Hb_006831_010 Hb_006831_010 Hb_000082_080--Hb_006831_010 Hb_000184_040 Hb_000184_040 Hb_000082_080--Hb_000184_040 Hb_152554_010 Hb_152554_010 Hb_006487_060--Hb_152554_010 Hb_007763_060 Hb_007763_060 Hb_006487_060--Hb_007763_060 Hb_000176_120 Hb_000176_120 Hb_006487_060--Hb_000176_120 Hb_006663_090 Hb_006663_090 Hb_006487_060--Hb_006663_090 Hb_006487_050 Hb_006487_050 Hb_006487_060--Hb_006487_050 Hb_000825_030 Hb_000825_030 Hb_006487_060--Hb_000825_030 Hb_000161_120 Hb_000161_120 Hb_000996_170--Hb_000161_120 Hb_000608_180 Hb_000608_180 Hb_000996_170--Hb_000608_180 Hb_150360_010 Hb_150360_010 Hb_000996_170--Hb_150360_010 Hb_012305_040 Hb_012305_040 Hb_000996_170--Hb_012305_040 Hb_000416_070 Hb_000416_070 Hb_000996_170--Hb_000416_070 Hb_000996_170--Hb_006487_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.26582 0 0.0448601 0.660997 0.399424 1.80333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.36454 0 0.362452 0.223031 0

CAGE analysis