Hb_000320_320

Information

Type -
Description -
Location Contig320: 238893-239770
Sequence    

Annotation

kegg
ID pop:POPTR_0004s01360g
description hypothetical protein
nr
ID XP_006383927.1
description hypothetical protein POPTR_0004s01360g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GHL3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s01360g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33813: 239104-239841 , PASA_asmbl_33814: 239138-239863
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_320 0.0 - - hypothetical protein POPTR_0004s01360g [Populus trichocarpa]
2 Hb_102156_010 0.1677108049 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004143_110 0.1766592629 - - PREDICTED: uncharacterized protein LOC105630719 isoform X2 [Jatropha curcas]
4 Hb_002272_260 0.183495077 - - -
5 Hb_011174_010 0.1838055772 - - hypothetical protein JCGZ_10122 [Jatropha curcas]
6 Hb_004502_050 0.1869620464 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
7 Hb_004235_030 0.1899200825 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
8 Hb_004117_180 0.1938935833 - - -
9 Hb_002660_050 0.1954888174 - - PREDICTED: uncharacterized protein LOC105642218 [Jatropha curcas]
10 Hb_002259_150 0.1954926103 - - BnaC04g40780D [Brassica napus]
11 Hb_000996_170 0.1969461128 - - unknown [Glycine max]
12 Hb_001002_040 0.1991895425 - - PREDICTED: ATP-citrate synthase beta chain protein 2 [Gossypium raimondii]
13 Hb_001377_180 0.20103743 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
14 Hb_005271_170 0.2047453564 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
15 Hb_000258_030 0.2051439731 - - -
16 Hb_001310_070 0.2052817419 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
17 Hb_000771_100 0.2053600299 - - Os06g0527300 [Oryza sativa Japonica Group]
18 Hb_006487_060 0.2059006889 - - Defective in cullin neddylation protein, putative [Ricinus communis]
19 Hb_002301_280 0.2061302369 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
20 Hb_006995_040 0.2075300581 - - PREDICTED: LOW QUALITY PROTEIN: 14 kDa zinc-binding protein-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000320_320 Hb_000320_320 Hb_102156_010 Hb_102156_010 Hb_000320_320--Hb_102156_010 Hb_004143_110 Hb_004143_110 Hb_000320_320--Hb_004143_110 Hb_002272_260 Hb_002272_260 Hb_000320_320--Hb_002272_260 Hb_011174_010 Hb_011174_010 Hb_000320_320--Hb_011174_010 Hb_004502_050 Hb_004502_050 Hb_000320_320--Hb_004502_050 Hb_004235_030 Hb_004235_030 Hb_000320_320--Hb_004235_030 Hb_002259_150 Hb_002259_150 Hb_102156_010--Hb_002259_150 Hb_000175_400 Hb_000175_400 Hb_102156_010--Hb_000175_400 Hb_000193_350 Hb_000193_350 Hb_102156_010--Hb_000193_350 Hb_000032_540 Hb_000032_540 Hb_102156_010--Hb_000032_540 Hb_102156_010--Hb_002272_260 Hb_004453_150 Hb_004453_150 Hb_102156_010--Hb_004453_150 Hb_004143_110--Hb_004453_150 Hb_004143_110--Hb_002272_260 Hb_015057_010 Hb_015057_010 Hb_004143_110--Hb_015057_010 Hb_006788_070 Hb_006788_070 Hb_004143_110--Hb_006788_070 Hb_009558_020 Hb_009558_020 Hb_004143_110--Hb_009558_020 Hb_004374_200 Hb_004374_200 Hb_004143_110--Hb_004374_200 Hb_000771_100 Hb_000771_100 Hb_002272_260--Hb_000771_100 Hb_002272_260--Hb_004453_150 Hb_000676_290 Hb_000676_290 Hb_002272_260--Hb_000676_290 Hb_002301_280 Hb_002301_280 Hb_002272_260--Hb_002301_280 Hb_002272_260--Hb_002259_150 Hb_002272_260--Hb_011174_010 Hb_000622_100 Hb_000622_100 Hb_011174_010--Hb_000622_100 Hb_004117_180 Hb_004117_180 Hb_011174_010--Hb_004117_180 Hb_011016_090 Hb_011016_090 Hb_011174_010--Hb_011016_090 Hb_073367_010 Hb_073367_010 Hb_011174_010--Hb_073367_010 Hb_011174_010--Hb_000771_100 Hb_028639_050 Hb_028639_050 Hb_004502_050--Hb_028639_050 Hb_004502_050--Hb_011016_090 Hb_005305_060 Hb_005305_060 Hb_004502_050--Hb_005305_060 Hb_003398_060 Hb_003398_060 Hb_004502_050--Hb_003398_060 Hb_027445_060 Hb_027445_060 Hb_004502_050--Hb_027445_060 Hb_004502_050--Hb_004117_180 Hb_002660_050 Hb_002660_050 Hb_004235_030--Hb_002660_050 Hb_028420_020 Hb_028420_020 Hb_004235_030--Hb_028420_020 Hb_000927_020 Hb_000927_020 Hb_004235_030--Hb_000927_020 Hb_003688_110 Hb_003688_110 Hb_004235_030--Hb_003688_110 Hb_005016_050 Hb_005016_050 Hb_004235_030--Hb_005016_050 Hb_004899_050 Hb_004899_050 Hb_004235_030--Hb_004899_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
239.59 8.91567 12.9149 300.293 183.354 865.526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
889.598 315.227 145.944 58.0645 47.89

CAGE analysis