Hb_000996_170

Information

Type -
Description -
Location Contig996: 166534-167974
Sequence    

Annotation

kegg
ID mdm:103437353
description tetraspanin-10
nr
ID ACU18696.1
description unknown [Glycine max]
swissprot
ID -
description -
trembl
ID C6TA44
description Putative uncharacterized protein OS=Glycine max PE=2 SV=1
Gene Ontology
ID GO:0016021
description tetraspanin-10 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64838: 166770-196457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000996_170 0.0 - - unknown [Glycine max]
2 Hb_000161_120 0.1441839557 - - unnamed protein product [Vitis vinifera]
3 Hb_000608_180 0.1571708286 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Tarenaya hassleriana]
4 Hb_150360_010 0.1573285082 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
5 Hb_012305_040 0.1597633455 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
6 Hb_000416_070 0.1602708172 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
7 Hb_006487_050 0.16684296 - - hypothetical protein PHAVU_005G049600g [Phaseolus vulgaris]
8 Hb_006252_010 0.1707610653 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
9 Hb_000176_120 0.1716091674 - - seryl-tRNA synthetase, putative [Ricinus communis]
10 Hb_001377_180 0.1717297228 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
11 Hb_002301_280 0.173267973 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
12 Hb_137403_010 0.1733366807 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
13 Hb_004712_180 0.1770569706 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006487_060 0.1781965069 - - Defective in cullin neddylation protein, putative [Ricinus communis]
15 Hb_184570_010 0.1827439284 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
16 Hb_073367_010 0.1833577004 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
17 Hb_003656_140 0.1848868871 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
18 Hb_000183_040 0.1852493357 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
19 Hb_010504_030 0.1857603967 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
20 Hb_002687_080 0.1876185017 - - hypothetical protein JCGZ_06535 [Jatropha curcas]

Gene co-expression network

sample Hb_000996_170 Hb_000996_170 Hb_000161_120 Hb_000161_120 Hb_000996_170--Hb_000161_120 Hb_000608_180 Hb_000608_180 Hb_000996_170--Hb_000608_180 Hb_150360_010 Hb_150360_010 Hb_000996_170--Hb_150360_010 Hb_012305_040 Hb_012305_040 Hb_000996_170--Hb_012305_040 Hb_000416_070 Hb_000416_070 Hb_000996_170--Hb_000416_070 Hb_006487_050 Hb_006487_050 Hb_000996_170--Hb_006487_050 Hb_136731_010 Hb_136731_010 Hb_000161_120--Hb_136731_010 Hb_000176_120 Hb_000176_120 Hb_000161_120--Hb_000176_120 Hb_000161_120--Hb_150360_010 Hb_005054_070 Hb_005054_070 Hb_000161_120--Hb_005054_070 Hb_012052_010 Hb_012052_010 Hb_000161_120--Hb_012052_010 Hb_006252_010 Hb_006252_010 Hb_000608_180--Hb_006252_010 Hb_002197_030 Hb_002197_030 Hb_000608_180--Hb_002197_030 Hb_006487_060 Hb_006487_060 Hb_000608_180--Hb_006487_060 Hb_137403_010 Hb_137403_010 Hb_000608_180--Hb_137403_010 Hb_005965_010 Hb_005965_010 Hb_000608_180--Hb_005965_010 Hb_002023_020 Hb_002023_020 Hb_000608_180--Hb_002023_020 Hb_003656_140 Hb_003656_140 Hb_150360_010--Hb_003656_140 Hb_150360_010--Hb_137403_010 Hb_041392_010 Hb_041392_010 Hb_150360_010--Hb_041392_010 Hb_004934_070 Hb_004934_070 Hb_150360_010--Hb_004934_070 Hb_000183_040 Hb_000183_040 Hb_150360_010--Hb_000183_040 Hb_002374_020 Hb_002374_020 Hb_150360_010--Hb_002374_020 Hb_004662_010 Hb_004662_010 Hb_012305_040--Hb_004662_010 Hb_012305_040--Hb_000176_120 Hb_000107_140 Hb_000107_140 Hb_012305_040--Hb_000107_140 Hb_073339_010 Hb_073339_010 Hb_012305_040--Hb_073339_010 Hb_144898_010 Hb_144898_010 Hb_012305_040--Hb_144898_010 Hb_004241_040 Hb_004241_040 Hb_012305_040--Hb_004241_040 Hb_184570_010 Hb_184570_010 Hb_000416_070--Hb_184570_010 Hb_000069_160 Hb_000069_160 Hb_000416_070--Hb_000069_160 Hb_140291_010 Hb_140291_010 Hb_000416_070--Hb_140291_010 Hb_012760_130 Hb_012760_130 Hb_000416_070--Hb_012760_130 Hb_000416_070--Hb_004934_070 Hb_002687_080 Hb_002687_080 Hb_000416_070--Hb_002687_080 Hb_000364_010 Hb_000364_010 Hb_006487_050--Hb_000364_010 Hb_006487_050--Hb_000069_160 Hb_006487_050--Hb_137403_010 Hb_000620_080 Hb_000620_080 Hb_006487_050--Hb_000620_080 Hb_000606_080 Hb_000606_080 Hb_006487_050--Hb_000606_080 Hb_002217_310 Hb_002217_310 Hb_006487_050--Hb_002217_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0527 8.0672 4.50767 18.1076 11.5024 47.6167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.7169 10.5551 3.13275 5.6775 1.543

CAGE analysis