Hb_002400_480

Information

Type -
Description -
Location Contig2400: 342536-347255
Sequence    

Annotation

kegg
ID pmum:103319881
description uncharacterized LOC103319881
nr
ID XP_012076489.1
description PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07127 PE=4 SV=1
Gene Ontology
ID GO:0005886
description tetratricopeptide repeat protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25207: 342553-347150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_480 0.0 - - PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
2 Hb_002601_040 0.1440534387 - - hypothetical protein JCGZ_06197 [Jatropha curcas]
3 Hb_000243_340 0.1499466445 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
4 Hb_000552_060 0.1552109348 - - PREDICTED: theobromine synthase 2-like isoform X3 [Jatropha curcas]
5 Hb_110631_010 0.1568916088 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
6 Hb_030088_010 0.1577908264 - - basic blue copper family protein [Populus trichocarpa]
7 Hb_004397_010 0.1618931962 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
8 Hb_059226_020 0.1637776935 - - hypothetical protein B456_008G287700 [Gossypium raimondii]
9 Hb_000086_510 0.1653725338 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
10 Hb_009615_030 0.167849443 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000028_620 0.1688964918 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001616_100 0.1696796325 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
13 Hb_000320_240 0.1716398582 - - multicopper oxidase, putative [Ricinus communis]
14 Hb_002304_100 0.1745749275 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
15 Hb_000339_050 0.1761253981 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
16 Hb_000157_020 0.1764350773 - - conserved hypothetical protein [Ricinus communis]
17 Hb_085829_010 0.176555859 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
18 Hb_039946_040 0.1774029542 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
19 Hb_000805_270 0.1778173721 - - PREDICTED: expansin-A4 [Gossypium raimondii]
20 Hb_002580_020 0.1823270861 - - hypothetical protein JCGZ_19971 [Jatropha curcas]

Gene co-expression network

sample Hb_002400_480 Hb_002400_480 Hb_002601_040 Hb_002601_040 Hb_002400_480--Hb_002601_040 Hb_000243_340 Hb_000243_340 Hb_002400_480--Hb_000243_340 Hb_000552_060 Hb_000552_060 Hb_002400_480--Hb_000552_060 Hb_110631_010 Hb_110631_010 Hb_002400_480--Hb_110631_010 Hb_030088_010 Hb_030088_010 Hb_002400_480--Hb_030088_010 Hb_004397_010 Hb_004397_010 Hb_002400_480--Hb_004397_010 Hb_002601_040--Hb_000243_340 Hb_002304_100 Hb_002304_100 Hb_002601_040--Hb_002304_100 Hb_000339_050 Hb_000339_050 Hb_002601_040--Hb_000339_050 Hb_001645_030 Hb_001645_030 Hb_002601_040--Hb_001645_030 Hb_000805_270 Hb_000805_270 Hb_002601_040--Hb_000805_270 Hb_000086_510 Hb_000086_510 Hb_002601_040--Hb_000086_510 Hb_000243_340--Hb_002304_100 Hb_000243_340--Hb_001645_030 Hb_000568_020 Hb_000568_020 Hb_000243_340--Hb_000568_020 Hb_000834_130 Hb_000834_130 Hb_000243_340--Hb_000834_130 Hb_000243_340--Hb_000339_050 Hb_000028_620 Hb_000028_620 Hb_000552_060--Hb_000028_620 Hb_009615_030 Hb_009615_030 Hb_000552_060--Hb_009615_030 Hb_002580_020 Hb_002580_020 Hb_000552_060--Hb_002580_020 Hb_000749_160 Hb_000749_160 Hb_000552_060--Hb_000749_160 Hb_000552_060--Hb_002601_040 Hb_000320_240 Hb_000320_240 Hb_110631_010--Hb_000320_240 Hb_000506_050 Hb_000506_050 Hb_110631_010--Hb_000506_050 Hb_110631_010--Hb_000086_510 Hb_001863_520 Hb_001863_520 Hb_110631_010--Hb_001863_520 Hb_001404_060 Hb_001404_060 Hb_110631_010--Hb_001404_060 Hb_165110_010 Hb_165110_010 Hb_110631_010--Hb_165110_010 Hb_005144_140 Hb_005144_140 Hb_030088_010--Hb_005144_140 Hb_162815_010 Hb_162815_010 Hb_030088_010--Hb_162815_010 Hb_000917_070 Hb_000917_070 Hb_030088_010--Hb_000917_070 Hb_030088_010--Hb_004397_010 Hb_001091_040 Hb_001091_040 Hb_030088_010--Hb_001091_040 Hb_039946_040 Hb_039946_040 Hb_030088_010--Hb_039946_040 Hb_059226_020 Hb_059226_020 Hb_004397_010--Hb_059226_020 Hb_120357_010 Hb_120357_010 Hb_004397_010--Hb_120357_010 Hb_004397_010--Hb_162815_010 Hb_006351_040 Hb_006351_040 Hb_004397_010--Hb_006351_040 Hb_066207_020 Hb_066207_020 Hb_004397_010--Hb_066207_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0804351 0.228401 1.27925 6.10116 0.0146869 0.270078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.81644 0.274227

CAGE analysis