Hb_001405_110

Information

Type -
Description -
Location Contig1405: 162904-165685
Sequence    

Annotation

kegg
ID vvi:100246404
description GS, 2, GS1, GS1-2; glutamine synthetase (EC:6.3.1.2)
nr
ID AAB61597.1
description glutamine synthetase [Hevea brasiliensis]
swissprot
ID P51119
description Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1
trembl
ID O22331
description Glutamine synthetase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005737
description glutamine synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_110 0.0 - - glutamine synthetase [Hevea brasiliensis]
2 Hb_016467_010 0.1395362927 - - hypothetical protein POPTR_0004s18340g [Populus trichocarpa]
3 Hb_084247_010 0.1526174674 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012395_170 0.1527507892 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002217_240 0.1534267948 - - PREDICTED: F-box protein At5g49610 [Jatropha curcas]
6 Hb_000300_690 0.15369573 - - hypothetical protein JCGZ_02719 [Jatropha curcas]
7 Hb_138585_090 0.1537042063 - - Long chain base2 isoform 2 [Theobroma cacao]
8 Hb_001124_010 0.1562012455 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X2 [Jatropha curcas]
9 Hb_000370_020 0.1570878541 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002740_030 0.1570970712 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
11 Hb_002026_220 0.1604986246 - - Glutamate--cysteine ligase, chloroplast precursor, putative [Ricinus communis]
12 Hb_005276_060 0.1607105156 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
13 Hb_001124_020 0.1616136433 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
14 Hb_000638_290 0.1619399359 - - PREDICTED: 5' exonuclease Apollo [Jatropha curcas]
15 Hb_003371_150 0.1620872846 - - PREDICTED: serine/threonine-protein kinase 10 [Jatropha curcas]
16 Hb_000768_170 0.1672567878 - - hypothetical protein JCGZ_02624 [Jatropha curcas]
17 Hb_028697_010 0.1673364907 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
18 Hb_029142_060 0.1678584367 - - PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha curcas]
19 Hb_003581_070 0.1685790296 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Malus domestica]
20 Hb_002863_050 0.1688539877 - - aldose 1-epimerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001405_110 Hb_001405_110 Hb_016467_010 Hb_016467_010 Hb_001405_110--Hb_016467_010 Hb_084247_010 Hb_084247_010 Hb_001405_110--Hb_084247_010 Hb_012395_170 Hb_012395_170 Hb_001405_110--Hb_012395_170 Hb_002217_240 Hb_002217_240 Hb_001405_110--Hb_002217_240 Hb_000300_690 Hb_000300_690 Hb_001405_110--Hb_000300_690 Hb_138585_090 Hb_138585_090 Hb_001405_110--Hb_138585_090 Hb_001124_010 Hb_001124_010 Hb_016467_010--Hb_001124_010 Hb_006132_110 Hb_006132_110 Hb_016467_010--Hb_006132_110 Hb_004312_010 Hb_004312_010 Hb_016467_010--Hb_004312_010 Hb_027428_010 Hb_027428_010 Hb_016467_010--Hb_027428_010 Hb_000649_230 Hb_000649_230 Hb_016467_010--Hb_000649_230 Hb_000046_040 Hb_000046_040 Hb_016467_010--Hb_000046_040 Hb_084247_010--Hb_012395_170 Hb_005276_060 Hb_005276_060 Hb_084247_010--Hb_005276_060 Hb_005162_090 Hb_005162_090 Hb_084247_010--Hb_005162_090 Hb_084247_010--Hb_001124_010 Hb_003929_070 Hb_003929_070 Hb_084247_010--Hb_003929_070 Hb_013575_010 Hb_013575_010 Hb_084247_010--Hb_013575_010 Hb_012395_170--Hb_005276_060 Hb_003617_020 Hb_003617_020 Hb_012395_170--Hb_003617_020 Hb_003929_170 Hb_003929_170 Hb_012395_170--Hb_003929_170 Hb_012395_170--Hb_001124_010 Hb_000390_250 Hb_000390_250 Hb_012395_170--Hb_000390_250 Hb_002754_010 Hb_002754_010 Hb_002217_240--Hb_002754_010 Hb_027380_130 Hb_027380_130 Hb_002217_240--Hb_027380_130 Hb_006455_120 Hb_006455_120 Hb_002217_240--Hb_006455_120 Hb_065525_040 Hb_065525_040 Hb_002217_240--Hb_065525_040 Hb_187679_010 Hb_187679_010 Hb_002217_240--Hb_187679_010 Hb_001159_130 Hb_001159_130 Hb_002217_240--Hb_001159_130 Hb_000056_040 Hb_000056_040 Hb_000300_690--Hb_000056_040 Hb_000690_160 Hb_000690_160 Hb_000300_690--Hb_000690_160 Hb_000599_180 Hb_000599_180 Hb_000300_690--Hb_000599_180 Hb_000300_690--Hb_000046_040 Hb_004884_070 Hb_004884_070 Hb_000300_690--Hb_004884_070 Hb_024836_010 Hb_024836_010 Hb_000300_690--Hb_024836_010 Hb_002863_050 Hb_002863_050 Hb_138585_090--Hb_002863_050 Hb_005496_140 Hb_005496_140 Hb_138585_090--Hb_005496_140 Hb_000340_180 Hb_000340_180 Hb_138585_090--Hb_000340_180 Hb_002013_020 Hb_002013_020 Hb_138585_090--Hb_002013_020 Hb_000925_130 Hb_000925_130 Hb_138585_090--Hb_000925_130 Hb_004162_130 Hb_004162_130 Hb_138585_090--Hb_004162_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
381.177 156.283 218.269 399.277 228.086 191.586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.6416 422.495 221.157 53.9637 194.602

CAGE analysis