Hb_002217_240

Information

Type -
Description -
Location Contig2217: 255898-256977
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15890g
description POPTRDRAFT_1091176; hypothetical protein
nr
ID XP_012084131.1
description PREDICTED: F-box protein At5g49610 [Jatropha curcas]
swissprot
ID Q9FGY4
description F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1
trembl
ID A0A067JVP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19042 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at5g49610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22918: 255810-256455 , PASA_asmbl_22919: 255744-257135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_240 0.0 - - PREDICTED: F-box protein At5g49610 [Jatropha curcas]
2 Hb_002754_010 0.0817264695 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
3 Hb_027380_130 0.0874331983 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
4 Hb_006455_120 0.0959161638 - - n6-DNA-methyltransferase, putative [Ricinus communis]
5 Hb_065525_040 0.0959209155 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
6 Hb_187679_010 0.0968601261 - - -
7 Hb_001159_130 0.0976553462 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
8 Hb_092337_010 0.0977078276 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
9 Hb_002863_050 0.0983285566 - - aldose 1-epimerase, putative [Ricinus communis]
10 Hb_005051_020 0.0984293682 - - hypothetical protein JCGZ_20345 [Jatropha curcas]
11 Hb_001799_210 0.0987330344 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
12 Hb_002375_070 0.0994021317 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000003_250 0.0998480396 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
14 Hb_005144_160 0.1003560236 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
15 Hb_001633_130 0.1006864884 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
16 Hb_084247_010 0.101275215 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000703_350 0.1013249768 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
18 Hb_001936_010 0.1014200436 - - hypothetical protein Csa_2G348280 [Cucumis sativus]
19 Hb_000580_180 0.1016622993 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004724_080 0.104617422 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002217_240 Hb_002217_240 Hb_002754_010 Hb_002754_010 Hb_002217_240--Hb_002754_010 Hb_027380_130 Hb_027380_130 Hb_002217_240--Hb_027380_130 Hb_006455_120 Hb_006455_120 Hb_002217_240--Hb_006455_120 Hb_065525_040 Hb_065525_040 Hb_002217_240--Hb_065525_040 Hb_187679_010 Hb_187679_010 Hb_002217_240--Hb_187679_010 Hb_001159_130 Hb_001159_130 Hb_002217_240--Hb_001159_130 Hb_164010_040 Hb_164010_040 Hb_002754_010--Hb_164010_040 Hb_000331_550 Hb_000331_550 Hb_002754_010--Hb_000331_550 Hb_000926_090 Hb_000926_090 Hb_002754_010--Hb_000926_090 Hb_002754_010--Hb_065525_040 Hb_013358_040 Hb_013358_040 Hb_002754_010--Hb_013358_040 Hb_001300_150 Hb_001300_150 Hb_002754_010--Hb_001300_150 Hb_027380_130--Hb_001300_150 Hb_023344_120 Hb_023344_120 Hb_027380_130--Hb_023344_120 Hb_000676_250 Hb_000676_250 Hb_027380_130--Hb_000676_250 Hb_027380_130--Hb_001159_130 Hb_027380_130--Hb_065525_040 Hb_000703_350 Hb_000703_350 Hb_027380_130--Hb_000703_350 Hb_006634_070 Hb_006634_070 Hb_006455_120--Hb_006634_070 Hb_011037_030 Hb_011037_030 Hb_006455_120--Hb_011037_030 Hb_000300_500 Hb_000300_500 Hb_006455_120--Hb_000300_500 Hb_000603_150 Hb_000603_150 Hb_006455_120--Hb_000603_150 Hb_000580_180 Hb_000580_180 Hb_006455_120--Hb_000580_180 Hb_000156_010 Hb_000156_010 Hb_006455_120--Hb_000156_010 Hb_000732_010 Hb_000732_010 Hb_065525_040--Hb_000732_010 Hb_005054_110 Hb_005054_110 Hb_065525_040--Hb_005054_110 Hb_065525_040--Hb_000331_550 Hb_005463_100 Hb_005463_100 Hb_065525_040--Hb_005463_100 Hb_000069_310 Hb_000069_310 Hb_065525_040--Hb_000069_310 Hb_187679_010--Hb_001159_130 Hb_155159_020 Hb_155159_020 Hb_187679_010--Hb_155159_020 Hb_001936_010 Hb_001936_010 Hb_187679_010--Hb_001936_010 Hb_187679_010--Hb_027380_130 Hb_187679_010--Hb_000300_500 Hb_084646_010 Hb_084646_010 Hb_187679_010--Hb_084646_010 Hb_000116_270 Hb_000116_270 Hb_001159_130--Hb_000116_270 Hb_001159_130--Hb_155159_020 Hb_003177_030 Hb_003177_030 Hb_001159_130--Hb_003177_030 Hb_001159_130--Hb_000603_150 Hb_000200_020 Hb_000200_020 Hb_001159_130--Hb_000200_020 Hb_000019_030 Hb_000019_030 Hb_001159_130--Hb_000019_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0472 8.51105 8.09781 15.7672 7.75643 10.7242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.72382 12.9405 15.5534 5.00561 6.70892

CAGE analysis