Hb_000946_140

Information

Type -
Description -
Location Contig946: 161495-162160
Sequence    

Annotation

kegg
ID mtr:MTR_8g081560
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID Q56XL5
description Putative uncharacterized protein At3g07280 OS=Arabidopsis thaliana GN=At3g07280 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63269: 150470-162720
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000946_140 0.0 - - -
2 Hb_004056_030 0.182120531 - - hypothetical protein 33 [Hevea brasiliensis]
3 Hb_001160_130 0.1883765571 - - Glycolipid transfer protein, putative [Ricinus communis]
4 Hb_007680_010 0.1928950557 - - hypothetical protein JCGZ_09539 [Jatropha curcas]
5 Hb_000260_570 0.2017455768 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_001617_020 0.2062310622 - - multidrug resistance pump, putative [Ricinus communis]
7 Hb_000997_360 0.2065405399 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
8 Hb_000635_210 0.2093485129 - - unknown [Populus trichocarpa]
9 Hb_011316_020 0.2105124014 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
10 Hb_012760_190 0.2108533967 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
11 Hb_114336_020 0.2137202491 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
12 Hb_000363_160 0.2143696057 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
13 Hb_092107_010 0.2160786478 - - conserved hypothetical protein [Ricinus communis]
14 Hb_027751_060 0.2164640339 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Jatropha curcas]
15 Hb_093458_050 0.2182823419 - - glutathione reductase [Hevea brasiliensis]
16 Hb_002078_480 0.2205870907 - - hypothetical protein CICLE_v10033318mg [Citrus clementina]
17 Hb_003117_010 0.220667847 - - PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]
18 Hb_000963_140 0.2214775347 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_000260_210 0.2215700967 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000922_390 0.2224889918 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]

Gene co-expression network

sample Hb_000946_140 Hb_000946_140 Hb_004056_030 Hb_004056_030 Hb_000946_140--Hb_004056_030 Hb_001160_130 Hb_001160_130 Hb_000946_140--Hb_001160_130 Hb_007680_010 Hb_007680_010 Hb_000946_140--Hb_007680_010 Hb_000260_570 Hb_000260_570 Hb_000946_140--Hb_000260_570 Hb_001617_020 Hb_001617_020 Hb_000946_140--Hb_001617_020 Hb_000997_360 Hb_000997_360 Hb_000946_140--Hb_000997_360 Hb_114336_020 Hb_114336_020 Hb_004056_030--Hb_114336_020 Hb_092107_010 Hb_092107_010 Hb_004056_030--Hb_092107_010 Hb_001073_050 Hb_001073_050 Hb_004056_030--Hb_001073_050 Hb_004056_030--Hb_000260_570 Hb_064441_010 Hb_064441_010 Hb_004056_030--Hb_064441_010 Hb_006472_050 Hb_006472_050 Hb_004056_030--Hb_006472_050 Hb_162275_030 Hb_162275_030 Hb_001160_130--Hb_162275_030 Hb_000260_210 Hb_000260_210 Hb_001160_130--Hb_000260_210 Hb_003687_150 Hb_003687_150 Hb_001160_130--Hb_003687_150 Hb_002119_120 Hb_002119_120 Hb_001160_130--Hb_002119_120 Hb_015057_060 Hb_015057_060 Hb_001160_130--Hb_015057_060 Hb_000329_180 Hb_000329_180 Hb_001160_130--Hb_000329_180 Hb_000363_160 Hb_000363_160 Hb_007680_010--Hb_000363_160 Hb_007963_040 Hb_007963_040 Hb_007680_010--Hb_007963_040 Hb_001897_040 Hb_001897_040 Hb_007680_010--Hb_001897_040 Hb_000365_020 Hb_000365_020 Hb_007680_010--Hb_000365_020 Hb_002903_090 Hb_002903_090 Hb_007680_010--Hb_002903_090 Hb_005162_070 Hb_005162_070 Hb_000260_570--Hb_005162_070 Hb_001493_180 Hb_001493_180 Hb_000260_570--Hb_001493_180 Hb_001090_050 Hb_001090_050 Hb_000260_570--Hb_001090_050 Hb_002027_040 Hb_002027_040 Hb_000260_570--Hb_002027_040 Hb_010608_050 Hb_010608_050 Hb_000260_570--Hb_010608_050 Hb_000617_150 Hb_000617_150 Hb_000260_570--Hb_000617_150 Hb_001617_020--Hb_001160_130 Hb_011360_080 Hb_011360_080 Hb_001617_020--Hb_011360_080 Hb_000368_060 Hb_000368_060 Hb_001617_020--Hb_000368_060 Hb_005539_240 Hb_005539_240 Hb_001617_020--Hb_005539_240 Hb_000061_300 Hb_000061_300 Hb_001617_020--Hb_000061_300 Hb_001946_320 Hb_001946_320 Hb_001617_020--Hb_001946_320 Hb_000125_210 Hb_000125_210 Hb_000997_360--Hb_000125_210 Hb_000635_210 Hb_000635_210 Hb_000997_360--Hb_000635_210 Hb_001218_040 Hb_001218_040 Hb_000997_360--Hb_001218_040 Hb_021443_080 Hb_021443_080 Hb_000997_360--Hb_021443_080 Hb_001775_110 Hb_001775_110 Hb_000997_360--Hb_001775_110 Hb_011512_040 Hb_011512_040 Hb_000997_360--Hb_011512_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.398623 0 0 0.699809 0.806039 0.387825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40036 1.10584 2.50046 0.516055 1.0802

CAGE analysis