Hb_002903_090

Information

Type -
Description -
Location Contig2903: 111939-114860
Sequence    

Annotation

kegg
ID rcu:RCOM_0935410
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_002519026.1
description sugar transporter, putative [Ricinus communis]
swissprot
ID Q0WUU6
description Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1
trembl
ID B9RZ57
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_0935410 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable polyol transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30438: 111957-115397
cDNA
(Sanger)
(ID:Location)		 001_G06.ab1: 112035-113705 , 010_K04.ab1: 112040-113615 , 012_O22.ab1: 112064-113256

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002903_090 0.0 - - sugar transporter, putative [Ricinus communis]
2 Hb_032215_050 0.1091393703 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
3 Hb_000446_090 0.1406346351 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
4 Hb_000080_190 0.1443091945 - - -
5 Hb_003943_040 0.144962407 - - DNA binding protein, putative [Ricinus communis]
6 Hb_005625_020 0.1459248882 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
7 Hb_004046_020 0.1470577895 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
8 Hb_006922_030 0.1475662659 - - ubiquitin, putative [Ricinus communis]
9 Hb_000363_160 0.1513136036 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
10 Hb_002006_090 0.1522447683 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
11 Hb_005280_010 0.1551257412 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
12 Hb_002769_050 0.1562597168 - - PREDICTED: endophilin-A1 [Jatropha curcas]
13 Hb_004204_140 0.1573044301 transcription factor TF Family: C2H2 hypothetical protein RCOM_1470470 [Ricinus communis]
14 Hb_000661_170 0.1619845647 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
15 Hb_002687_110 0.164369435 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
16 Hb_001085_170 0.164520654 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
17 Hb_002496_050 0.1645416428 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
18 Hb_001329_300 0.1651645171 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
19 Hb_000069_460 0.1657036903 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
20 Hb_000134_110 0.1660318179 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Vitis vinifera]

Gene co-expression network

sample Hb_002903_090 Hb_002903_090 Hb_032215_050 Hb_032215_050 Hb_002903_090--Hb_032215_050 Hb_000446_090 Hb_000446_090 Hb_002903_090--Hb_000446_090 Hb_000080_190 Hb_000080_190 Hb_002903_090--Hb_000080_190 Hb_003943_040 Hb_003943_040 Hb_002903_090--Hb_003943_040 Hb_005625_020 Hb_005625_020 Hb_002903_090--Hb_005625_020 Hb_004046_020 Hb_004046_020 Hb_002903_090--Hb_004046_020 Hb_032215_050--Hb_003943_040 Hb_032215_050--Hb_000080_190 Hb_003206_070 Hb_003206_070 Hb_032215_050--Hb_003206_070 Hb_004724_420 Hb_004724_420 Hb_032215_050--Hb_004724_420 Hb_002687_110 Hb_002687_110 Hb_032215_050--Hb_002687_110 Hb_000661_170 Hb_000661_170 Hb_000446_090--Hb_000661_170 Hb_004046_010 Hb_004046_010 Hb_000446_090--Hb_004046_010 Hb_001047_020 Hb_001047_020 Hb_000446_090--Hb_001047_020 Hb_000190_140 Hb_000190_140 Hb_000446_090--Hb_000190_140 Hb_000110_160 Hb_000110_160 Hb_000446_090--Hb_000110_160 Hb_015306_020 Hb_015306_020 Hb_000446_090--Hb_015306_020 Hb_000080_190--Hb_002687_110 Hb_000080_190--Hb_005625_020 Hb_000898_040 Hb_000898_040 Hb_000080_190--Hb_000898_040 Hb_004738_040 Hb_004738_040 Hb_000080_190--Hb_004738_040 Hb_009048_040 Hb_009048_040 Hb_000080_190--Hb_009048_040 Hb_000409_020 Hb_000409_020 Hb_000080_190--Hb_000409_020 Hb_003943_040--Hb_002687_110 Hb_003943_040--Hb_004738_040 Hb_001277_330 Hb_001277_330 Hb_003943_040--Hb_001277_330 Hb_003943_040--Hb_000409_020 Hb_011316_040 Hb_011316_040 Hb_003943_040--Hb_011316_040 Hb_003943_040--Hb_004724_420 Hb_005625_020--Hb_002687_110 Hb_002769_050 Hb_002769_050 Hb_005625_020--Hb_002769_050 Hb_005625_020--Hb_004738_040 Hb_005625_020--Hb_000898_040 Hb_154648_010 Hb_154648_010 Hb_005625_020--Hb_154648_010 Hb_000169_090 Hb_000169_090 Hb_004046_020--Hb_000169_090 Hb_004046_020--Hb_000898_040 Hb_000928_020 Hb_000928_020 Hb_004046_020--Hb_000928_020 Hb_005054_100 Hb_005054_100 Hb_004046_020--Hb_005054_100 Hb_007545_030 Hb_007545_030 Hb_004046_020--Hb_007545_030 Hb_002299_060 Hb_002299_060 Hb_004046_020--Hb_002299_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4416 1.08203 0.856963 5.63372 4.56118 9.92162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.26095 4.46136 19.0942 4.69318 5.55205

CAGE analysis