Hb_000755_090

Information

Type -
Description -
Location Contig755: 136655-141287
Sequence    

Annotation

kegg
ID rcu:RCOM_1015940
description transferase, putative (EC:2.4.1.12)
nr
ID XP_002529325.1
description transferase, putative [Ricinus communis]
swissprot
ID Q339N5
description Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2
trembl
ID B9STK6
description Transferase, putative OS=Ricinus communis GN=RCOM_1015940 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cellulose synthase-like protein h1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57018: 136659-141210 , PASA_asmbl_57019: 137627-137833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000755_090 0.0 - - transferase, putative [Ricinus communis]
2 Hb_024948_010 0.1600127044 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
3 Hb_005622_030 0.1652365978 - - transferase, putative [Ricinus communis]
4 Hb_020273_010 0.1697086402 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
5 Hb_012813_020 0.1748478775 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like isoform X2 [Jatropha curcas]
6 Hb_002217_060 0.1871542681 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
7 Hb_027556_070 0.1899995664 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006916_130 0.1903680049 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
9 Hb_003592_060 0.1926501599 - - hypothetical protein F383_11017 [Gossypium arboreum]
10 Hb_005743_010 0.1967916181 - - RING/U-box superfamily protein, putative [Theobroma cacao]
11 Hb_000431_140 0.2012001737 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
12 Hb_028707_120 0.2042286392 - - PREDICTED: uncharacterized protein LOC105645799 isoform X2 [Jatropha curcas]
13 Hb_000205_180 0.2083644748 - - lipoxygenase, putative [Ricinus communis]
14 Hb_007225_010 0.2087859402 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
15 Hb_138229_010 0.2097103579 - - hypothetical protein JCGZ_05736 [Jatropha curcas]
16 Hb_001476_030 0.2118268544 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
17 Hb_023771_030 0.2118930656 - - unnamed protein product [Vitis vinifera]
18 Hb_009693_010 0.2123731777 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
19 Hb_001369_460 0.2136964721 - - vacuolar invertase [Manihot esculenta]
20 Hb_006266_010 0.2153836933 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000755_090 Hb_000755_090 Hb_024948_010 Hb_024948_010 Hb_000755_090--Hb_024948_010 Hb_005622_030 Hb_005622_030 Hb_000755_090--Hb_005622_030 Hb_020273_010 Hb_020273_010 Hb_000755_090--Hb_020273_010 Hb_012813_020 Hb_012813_020 Hb_000755_090--Hb_012813_020 Hb_002217_060 Hb_002217_060 Hb_000755_090--Hb_002217_060 Hb_027556_070 Hb_027556_070 Hb_000755_090--Hb_027556_070 Hb_010053_010 Hb_010053_010 Hb_024948_010--Hb_010053_010 Hb_000431_140 Hb_000431_140 Hb_024948_010--Hb_000431_140 Hb_000128_050 Hb_000128_050 Hb_024948_010--Hb_000128_050 Hb_164300_010 Hb_164300_010 Hb_024948_010--Hb_164300_010 Hb_000832_250 Hb_000832_250 Hb_024948_010--Hb_000832_250 Hb_000552_030 Hb_000552_030 Hb_024948_010--Hb_000552_030 Hb_010678_010 Hb_010678_010 Hb_005622_030--Hb_010678_010 Hb_040718_010 Hb_040718_010 Hb_005622_030--Hb_040718_010 Hb_002151_150 Hb_002151_150 Hb_005622_030--Hb_002151_150 Hb_005050_030 Hb_005050_030 Hb_005622_030--Hb_005050_030 Hb_000560_060 Hb_000560_060 Hb_005622_030--Hb_000560_060 Hb_020273_010--Hb_002217_060 Hb_000205_180 Hb_000205_180 Hb_020273_010--Hb_000205_180 Hb_020273_010--Hb_012813_020 Hb_001310_060 Hb_001310_060 Hb_020273_010--Hb_001310_060 Hb_023771_030 Hb_023771_030 Hb_020273_010--Hb_023771_030 Hb_001369_550 Hb_001369_550 Hb_020273_010--Hb_001369_550 Hb_012813_020--Hb_023771_030 Hb_006916_130 Hb_006916_130 Hb_012813_020--Hb_006916_130 Hb_001369_460 Hb_001369_460 Hb_012813_020--Hb_001369_460 Hb_012813_020--Hb_002217_060 Hb_012813_020--Hb_000205_180 Hb_002217_060--Hb_023771_030 Hb_001284_070 Hb_001284_070 Hb_002217_060--Hb_001284_070 Hb_003592_060 Hb_003592_060 Hb_002217_060--Hb_003592_060 Hb_002217_060--Hb_001310_060 Hb_002851_070 Hb_002851_070 Hb_002217_060--Hb_002851_070 Hb_152180_010 Hb_152180_010 Hb_027556_070--Hb_152180_010 Hb_007225_010 Hb_007225_010 Hb_027556_070--Hb_007225_010 Hb_158845_020 Hb_158845_020 Hb_027556_070--Hb_158845_020 Hb_000071_080 Hb_000071_080 Hb_027556_070--Hb_000071_080 Hb_003247_050 Hb_003247_050 Hb_027556_070--Hb_003247_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0765549 47.383 4.46634 0 0.00676389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 19.8259 12.4855

CAGE analysis