Hb_027556_070

Information

Type -
Description -
Location Contig27556: 25856-26147
Sequence    

Annotation

kegg
ID rcu:RCOM_1441950
description hypothetical protein
nr
ID XP_002512729.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RGM0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1441950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28841: 25200-26233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027556_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_152180_010 0.169129802 - - Blue copper protein precursor, putative [Ricinus communis]
3 Hb_000755_090 0.1899995664 - - transferase, putative [Ricinus communis]
4 Hb_007225_010 0.2022429372 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
5 Hb_158845_020 0.2266880272 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
6 Hb_000071_080 0.2267876086 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
7 Hb_003247_050 0.2268038076 - - -
8 Hb_007524_090 0.2269265223 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_105767_020 0.2270427357 - - -
10 Hb_103586_010 0.2271345115 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Glycine max]
11 Hb_152598_010 0.2273020017 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
12 Hb_000816_070 0.2297820592 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000230_350 0.2304041701 - - PREDICTED: uncharacterized protein LOC105630371 [Jatropha curcas]
14 Hb_001249_040 0.2332869757 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
15 Hb_000431_140 0.2380954295 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
16 Hb_005062_090 0.2384814599 - - ferredoxin [Vibrio natriegens]
17 Hb_004028_010 0.2390312603 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_000212_200 0.2394132958 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
19 Hb_001581_030 0.2394795157 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
20 Hb_027468_010 0.2395701227 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_027556_070 Hb_027556_070 Hb_152180_010 Hb_152180_010 Hb_027556_070--Hb_152180_010 Hb_000755_090 Hb_000755_090 Hb_027556_070--Hb_000755_090 Hb_007225_010 Hb_007225_010 Hb_027556_070--Hb_007225_010 Hb_158845_020 Hb_158845_020 Hb_027556_070--Hb_158845_020 Hb_000071_080 Hb_000071_080 Hb_027556_070--Hb_000071_080 Hb_003247_050 Hb_003247_050 Hb_027556_070--Hb_003247_050 Hb_014658_010 Hb_014658_010 Hb_152180_010--Hb_014658_010 Hb_004554_010 Hb_004554_010 Hb_152180_010--Hb_004554_010 Hb_001476_040 Hb_001476_040 Hb_152180_010--Hb_001476_040 Hb_152180_010--Hb_007225_010 Hb_005622_030 Hb_005622_030 Hb_152180_010--Hb_005622_030 Hb_024948_010 Hb_024948_010 Hb_000755_090--Hb_024948_010 Hb_000755_090--Hb_005622_030 Hb_020273_010 Hb_020273_010 Hb_000755_090--Hb_020273_010 Hb_012813_020 Hb_012813_020 Hb_000755_090--Hb_012813_020 Hb_002217_060 Hb_002217_060 Hb_000755_090--Hb_002217_060 Hb_005839_080 Hb_005839_080 Hb_007225_010--Hb_005839_080 Hb_000152_580 Hb_000152_580 Hb_007225_010--Hb_000152_580 Hb_000163_140 Hb_000163_140 Hb_007225_010--Hb_000163_140 Hb_008132_010 Hb_008132_010 Hb_007225_010--Hb_008132_010 Hb_007225_010--Hb_001476_040 Hb_002918_170 Hb_002918_170 Hb_007225_010--Hb_002918_170 Hb_158845_020--Hb_000071_080 Hb_158845_020--Hb_003247_050 Hb_007524_090 Hb_007524_090 Hb_158845_020--Hb_007524_090 Hb_105767_020 Hb_105767_020 Hb_158845_020--Hb_105767_020 Hb_103586_010 Hb_103586_010 Hb_158845_020--Hb_103586_010 Hb_152598_010 Hb_152598_010 Hb_158845_020--Hb_152598_010 Hb_000071_080--Hb_003247_050 Hb_000071_080--Hb_007524_090 Hb_000071_080--Hb_105767_020 Hb_000071_080--Hb_103586_010 Hb_000071_080--Hb_152598_010 Hb_003247_050--Hb_007524_090 Hb_003247_050--Hb_105767_020 Hb_003247_050--Hb_103586_010 Hb_003247_050--Hb_152598_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 27.9531 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.37546 3.99292

CAGE analysis