Hb_152598_010

Information

Type -
Description -
Location Contig152598: 18-620
Sequence    

Annotation

kegg
ID pda:103720554
description uncharacterized LOC103720554
nr
ID XP_009623963.1
description PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID A0A0B0N6X1
description Zinc finger CCHC domain-containing 8 OS=Gossypium arboreum GN=F383_35550 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC105796032

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152598_010 0.0 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
2 Hb_103586_010 0.0024629863 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Glycine max]
3 Hb_158845_020 0.0211523722 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
4 Hb_000816_070 0.0212346079 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000071_080 0.0253204666 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
6 Hb_003247_050 0.0258024927 - - -
7 Hb_007524_090 0.0288045555 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_105767_020 0.0310476043 - - -
9 Hb_001249_040 0.0391592735 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
10 Hb_000230_350 0.0600046179 - - PREDICTED: uncharacterized protein LOC105630371 [Jatropha curcas]
11 Hb_003209_180 0.0811332874 - - Alpha-1,4 glucan phosphorylase L-2 isozyme [Morus notabilis]
12 Hb_005062_090 0.0936746012 - - ferredoxin [Vibrio natriegens]
13 Hb_004028_010 0.0954713299 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_000212_200 0.0966981648 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
15 Hb_001581_030 0.096909086 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
16 Hb_027468_010 0.0971968731 - - kinase, putative [Ricinus communis]
17 Hb_021943_010 0.0996504635 - - -
18 Hb_004017_020 0.1009739619 - - Squalene monooxygenase, putative [Ricinus communis]
19 Hb_003848_050 0.1016176909 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
20 Hb_158467_020 0.1037715501 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]

Gene co-expression network

sample Hb_152598_010 Hb_152598_010 Hb_103586_010 Hb_103586_010 Hb_152598_010--Hb_103586_010 Hb_158845_020 Hb_158845_020 Hb_152598_010--Hb_158845_020 Hb_000816_070 Hb_000816_070 Hb_152598_010--Hb_000816_070 Hb_000071_080 Hb_000071_080 Hb_152598_010--Hb_000071_080 Hb_003247_050 Hb_003247_050 Hb_152598_010--Hb_003247_050 Hb_007524_090 Hb_007524_090 Hb_152598_010--Hb_007524_090 Hb_103586_010--Hb_158845_020 Hb_103586_010--Hb_000071_080 Hb_103586_010--Hb_003247_050 Hb_103586_010--Hb_000816_070 Hb_103586_010--Hb_007524_090 Hb_158845_020--Hb_000071_080 Hb_158845_020--Hb_003247_050 Hb_158845_020--Hb_007524_090 Hb_105767_020 Hb_105767_020 Hb_158845_020--Hb_105767_020 Hb_001249_040 Hb_001249_040 Hb_000816_070--Hb_001249_040 Hb_000816_070--Hb_158845_020 Hb_000816_070--Hb_000071_080 Hb_000816_070--Hb_003247_050 Hb_000071_080--Hb_003247_050 Hb_000071_080--Hb_007524_090 Hb_000071_080--Hb_105767_020 Hb_003247_050--Hb_007524_090 Hb_003247_050--Hb_105767_020 Hb_007524_090--Hb_105767_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.251583 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0682532 0

CAGE analysis