Hb_001249_040

Information

Type -
Description -
Location Contig1249: 144806-146218
Sequence    

Annotation

kegg
ID sly:101265754
description uncharacterized LOC101265754
nr
ID XP_012080915.1
description PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0D2U001
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G092500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001249_040 0.0 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
2 Hb_000816_070 0.0179360039 - - conserved hypothetical protein [Ricinus communis]
3 Hb_152598_010 0.0391592735 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
4 Hb_103586_010 0.0416193319 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Glycine max]
5 Hb_003209_180 0.0420873483 - - Alpha-1,4 glucan phosphorylase L-2 isozyme [Morus notabilis]
6 Hb_158845_020 0.0602763746 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
7 Hb_000071_080 0.064434923 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
8 Hb_003247_050 0.0649157925 - - -
9 Hb_007524_090 0.0679104096 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_105767_020 0.0701476253 - - -
11 Hb_000230_350 0.0990098127 - - PREDICTED: uncharacterized protein LOC105630371 [Jatropha curcas]
12 Hb_005062_090 0.1325287675 - - ferredoxin [Vibrio natriegens]
13 Hb_004028_010 0.134316335 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_000212_200 0.1355368543 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
15 Hb_001581_030 0.1357466848 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
16 Hb_027468_010 0.1360329815 - - kinase, putative [Ricinus communis]
17 Hb_021943_010 0.1384737566 - - -
18 Hb_004017_020 0.1397902626 - - Squalene monooxygenase, putative [Ricinus communis]
19 Hb_003848_050 0.1404305706 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
20 Hb_158467_020 0.142572889 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]

Gene co-expression network

sample Hb_001249_040 Hb_001249_040 Hb_000816_070 Hb_000816_070 Hb_001249_040--Hb_000816_070 Hb_152598_010 Hb_152598_010 Hb_001249_040--Hb_152598_010 Hb_103586_010 Hb_103586_010 Hb_001249_040--Hb_103586_010 Hb_003209_180 Hb_003209_180 Hb_001249_040--Hb_003209_180 Hb_158845_020 Hb_158845_020 Hb_001249_040--Hb_158845_020 Hb_000071_080 Hb_000071_080 Hb_001249_040--Hb_000071_080 Hb_000816_070--Hb_152598_010 Hb_000816_070--Hb_103586_010 Hb_000816_070--Hb_158845_020 Hb_000816_070--Hb_000071_080 Hb_003247_050 Hb_003247_050 Hb_000816_070--Hb_003247_050 Hb_152598_010--Hb_103586_010 Hb_152598_010--Hb_158845_020 Hb_152598_010--Hb_000071_080 Hb_152598_010--Hb_003247_050 Hb_007524_090 Hb_007524_090 Hb_152598_010--Hb_007524_090 Hb_103586_010--Hb_158845_020 Hb_103586_010--Hb_000071_080 Hb_103586_010--Hb_003247_050 Hb_103586_010--Hb_007524_090 Hb_003209_180--Hb_000816_070 Hb_003209_180--Hb_152598_010 Hb_003209_180--Hb_103586_010 Hb_003209_180--Hb_158845_020 Hb_003209_180--Hb_000071_080 Hb_158845_020--Hb_000071_080 Hb_158845_020--Hb_003247_050 Hb_158845_020--Hb_007524_090 Hb_105767_020 Hb_105767_020 Hb_158845_020--Hb_105767_020 Hb_000071_080--Hb_003247_050 Hb_000071_080--Hb_007524_090 Hb_000071_080--Hb_105767_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.278508 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0598475 0

CAGE analysis