Hb_007524_090

Information

Type -
Description -
Location Contig7524: 90667-93962
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007524_090 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_105767_020 0.0022442995 - - -
3 Hb_003247_050 0.0030034652 - - -
4 Hb_000071_080 0.0034856872 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
5 Hb_158845_020 0.0076551347 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
6 Hb_103586_010 0.0263427872 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Glycine max]
7 Hb_152598_010 0.0288045555 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
8 Hb_000230_350 0.0312322493 - - PREDICTED: uncharacterized protein LOC105630371 [Jatropha curcas]
9 Hb_000816_070 0.0500184476 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005062_090 0.0649695261 - - ferredoxin [Vibrio natriegens]
11 Hb_004028_010 0.0667707048 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_001249_040 0.0679104096 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
13 Hb_000212_200 0.0680006257 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
14 Hb_001581_030 0.0682120813 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
15 Hb_027468_010 0.0685005993 - - kinase, putative [Ricinus communis]
16 Hb_021943_010 0.0709605066 - - -
17 Hb_004017_020 0.0722874751 - - Squalene monooxygenase, putative [Ricinus communis]
18 Hb_003848_050 0.0729329078 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
19 Hb_158467_020 0.0750925419 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
20 Hb_002415_010 0.0755697933 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]

Gene co-expression network

sample Hb_007524_090 Hb_007524_090 Hb_105767_020 Hb_105767_020 Hb_007524_090--Hb_105767_020 Hb_003247_050 Hb_003247_050 Hb_007524_090--Hb_003247_050 Hb_000071_080 Hb_000071_080 Hb_007524_090--Hb_000071_080 Hb_158845_020 Hb_158845_020 Hb_007524_090--Hb_158845_020 Hb_103586_010 Hb_103586_010 Hb_007524_090--Hb_103586_010 Hb_152598_010 Hb_152598_010 Hb_007524_090--Hb_152598_010 Hb_105767_020--Hb_003247_050 Hb_105767_020--Hb_000071_080 Hb_105767_020--Hb_158845_020 Hb_105767_020--Hb_103586_010 Hb_000230_350 Hb_000230_350 Hb_105767_020--Hb_000230_350 Hb_003247_050--Hb_000071_080 Hb_003247_050--Hb_158845_020 Hb_003247_050--Hb_103586_010 Hb_003247_050--Hb_152598_010 Hb_000071_080--Hb_158845_020 Hb_000071_080--Hb_103586_010 Hb_000071_080--Hb_152598_010 Hb_158845_020--Hb_103586_010 Hb_158845_020--Hb_152598_010 Hb_103586_010--Hb_152598_010 Hb_000816_070 Hb_000816_070 Hb_103586_010--Hb_000816_070 Hb_152598_010--Hb_000816_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0162304 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00517704 0

CAGE analysis