Hb_000230_350

Information

Type -
Description -
Location Contig230: 338074-338893
Sequence    

Annotation

kegg
ID bvg:104902499
description uncharacterized LOC104902499
nr
ID XP_012067563.1
description PREDICTED: uncharacterized protein LOC105630371 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID M5VP36
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014760mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_350 0.0 - - PREDICTED: uncharacterized protein LOC105630371 [Jatropha curcas]
2 Hb_105767_020 0.0289891078 - - -
3 Hb_007524_090 0.0312322493 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_005062_090 0.0337730984 - - ferredoxin [Vibrio natriegens]
5 Hb_003247_050 0.0342338705 - - -
6 Hb_000071_080 0.0347157648 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
7 Hb_004028_010 0.0355771445 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_000212_200 0.0368090764 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
9 Hb_001581_030 0.037020882 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
10 Hb_027468_010 0.0373098798 - - kinase, putative [Ricinus communis]
11 Hb_158845_020 0.0388820102 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
12 Hb_021943_010 0.0397739718 - - -
13 Hb_004017_020 0.0411032679 - - Squalene monooxygenase, putative [Ricinus communis]
14 Hb_003848_050 0.0417498504 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
15 Hb_158467_020 0.0439134159 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
16 Hb_002415_010 0.0443915534 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
17 Hb_005503_020 0.0446818236 - - Hypothetical protein glysoja_025074 [Glycine soja]
18 Hb_002233_180 0.0464585765 - - -
19 Hb_000123_130 0.0485958312 - - hypothetical protein POPTR_0008s05200g, partial [Populus trichocarpa]
20 Hb_073973_040 0.049898691 - - PREDICTED: uncharacterized protein LOC103941330 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000230_350 Hb_000230_350 Hb_105767_020 Hb_105767_020 Hb_000230_350--Hb_105767_020 Hb_007524_090 Hb_007524_090 Hb_000230_350--Hb_007524_090 Hb_005062_090 Hb_005062_090 Hb_000230_350--Hb_005062_090 Hb_003247_050 Hb_003247_050 Hb_000230_350--Hb_003247_050 Hb_000071_080 Hb_000071_080 Hb_000230_350--Hb_000071_080 Hb_004028_010 Hb_004028_010 Hb_000230_350--Hb_004028_010 Hb_105767_020--Hb_007524_090 Hb_105767_020--Hb_003247_050 Hb_105767_020--Hb_000071_080 Hb_158845_020 Hb_158845_020 Hb_105767_020--Hb_158845_020 Hb_103586_010 Hb_103586_010 Hb_105767_020--Hb_103586_010 Hb_007524_090--Hb_003247_050 Hb_007524_090--Hb_000071_080 Hb_007524_090--Hb_158845_020 Hb_007524_090--Hb_103586_010 Hb_152598_010 Hb_152598_010 Hb_007524_090--Hb_152598_010 Hb_005062_090--Hb_004028_010 Hb_000212_200 Hb_000212_200 Hb_005062_090--Hb_000212_200 Hb_001581_030 Hb_001581_030 Hb_005062_090--Hb_001581_030 Hb_027468_010 Hb_027468_010 Hb_005062_090--Hb_027468_010 Hb_021943_010 Hb_021943_010 Hb_005062_090--Hb_021943_010 Hb_004017_020 Hb_004017_020 Hb_005062_090--Hb_004017_020 Hb_003247_050--Hb_000071_080 Hb_003247_050--Hb_158845_020 Hb_003247_050--Hb_103586_010 Hb_003247_050--Hb_152598_010 Hb_000071_080--Hb_158845_020 Hb_000071_080--Hb_103586_010 Hb_000071_080--Hb_152598_010 Hb_004028_010--Hb_000212_200 Hb_004028_010--Hb_001581_030 Hb_004028_010--Hb_027468_010 Hb_004028_010--Hb_021943_010 Hb_004028_010--Hb_004017_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.148381 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0560009 0

CAGE analysis