Hb_000436_060

Information

Type -
Description -
Location Contig436: 103699-113833
Sequence    

Annotation

kegg
ID vvi:100256016
description uncharacterized LOC100256016
nr
ID CAN77450.1
description hypothetical protein VITISV_016971 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C0G0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016971 PE=4 SV=1
Gene Ontology
ID GO:0003676
description endonuclease exonuclease phosphatase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000436_060 0.0 - - hypothetical protein VITISV_016971 [Vitis vinifera]
2 Hb_000059_160 0.2366490525 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
3 Hb_179860_010 0.2577844825 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007858_030 0.2639193974 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
5 Hb_005545_080 0.2662641506 - - hypothetical protein JCGZ_01293 [Jatropha curcas]
6 Hb_000175_250 0.2766922624 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
7 Hb_141990_050 0.2800198021 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
8 Hb_004924_030 0.2830499196 - - -
9 Hb_011232_010 0.2843771379 - - Leucine-rich repeat receptor-like protein kinase family protein [Theobroma cacao]
10 Hb_091913_010 0.2874002568 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
11 Hb_008897_020 0.2885160393 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Musa acuminata subsp. malaccensis]
12 Hb_000297_100 0.2888070321 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
13 Hb_001004_010 0.2897403804 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002284_040 0.2913936125 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_002097_120 0.2922744118 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
16 Hb_000815_150 0.295317641 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
17 Hb_000019_140 0.2979789315 - - Light-regulated protein precursor, putative [Ricinus communis]
18 Hb_008695_030 0.2979800413 - - hypothetical protein JCGZ_12043 [Jatropha curcas]
19 Hb_039650_030 0.2994826254 - - hypothetical protein RCOM_2128750 [Ricinus communis]
20 Hb_045414_010 0.3017104297 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000436_060 Hb_000436_060 Hb_000059_160 Hb_000059_160 Hb_000436_060--Hb_000059_160 Hb_179860_010 Hb_179860_010 Hb_000436_060--Hb_179860_010 Hb_007858_030 Hb_007858_030 Hb_000436_060--Hb_007858_030 Hb_005545_080 Hb_005545_080 Hb_000436_060--Hb_005545_080 Hb_000175_250 Hb_000175_250 Hb_000436_060--Hb_000175_250 Hb_141990_050 Hb_141990_050 Hb_000436_060--Hb_141990_050 Hb_000059_160--Hb_007858_030 Hb_004924_030 Hb_004924_030 Hb_000059_160--Hb_004924_030 Hb_091913_010 Hb_091913_010 Hb_000059_160--Hb_091913_010 Hb_039650_030 Hb_039650_030 Hb_000059_160--Hb_039650_030 Hb_008897_020 Hb_008897_020 Hb_000059_160--Hb_008897_020 Hb_000059_160--Hb_000175_250 Hb_005000_230 Hb_005000_230 Hb_179860_010--Hb_005000_230 Hb_002864_040 Hb_002864_040 Hb_179860_010--Hb_002864_040 Hb_045414_010 Hb_045414_010 Hb_179860_010--Hb_045414_010 Hb_000155_100 Hb_000155_100 Hb_179860_010--Hb_000155_100 Hb_000645_100 Hb_000645_100 Hb_179860_010--Hb_000645_100 Hb_005643_020 Hb_005643_020 Hb_179860_010--Hb_005643_020 Hb_000205_220 Hb_000205_220 Hb_007858_030--Hb_000205_220 Hb_010091_040 Hb_010091_040 Hb_007858_030--Hb_010091_040 Hb_052764_010 Hb_052764_010 Hb_007858_030--Hb_052764_010 Hb_002284_040 Hb_002284_040 Hb_007858_030--Hb_002284_040 Hb_007858_030--Hb_091913_010 Hb_004712_140 Hb_004712_140 Hb_005545_080--Hb_004712_140 Hb_000117_110 Hb_000117_110 Hb_005545_080--Hb_000117_110 Hb_005545_080--Hb_004924_030 Hb_000297_100 Hb_000297_100 Hb_005545_080--Hb_000297_100 Hb_010327_010 Hb_010327_010 Hb_005545_080--Hb_010327_010 Hb_001677_130 Hb_001677_130 Hb_005545_080--Hb_001677_130 Hb_000175_250--Hb_039650_030 Hb_000175_250--Hb_004924_030 Hb_028841_020 Hb_028841_020 Hb_000175_250--Hb_028841_020 Hb_007328_010 Hb_007328_010 Hb_000175_250--Hb_007328_010 Hb_012496_010 Hb_012496_010 Hb_000175_250--Hb_012496_010 Hb_000175_250--Hb_141990_050 Hb_141990_050--Hb_007328_010 Hb_000522_120 Hb_000522_120 Hb_141990_050--Hb_000522_120 Hb_009189_010 Hb_009189_010 Hb_141990_050--Hb_009189_010 Hb_002849_030 Hb_002849_030 Hb_141990_050--Hb_002849_030 Hb_073870_020 Hb_073870_020 Hb_141990_050--Hb_073870_020 Hb_005588_010 Hb_005588_010 Hb_141990_050--Hb_005588_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.259204 0.0401839 0 0 0.00843995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0201538 0.0158582 0 0 0.0336096

CAGE analysis