Hb_000351_140

Information

Type -
Description -
Location Contig351: 154434-161874
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09420g
description hypothetical protein
nr
ID XP_009347396.1
description PREDICTED: vacuolar protein sorting-associated protein 9A-like isoform X3 [Pyrus x bretschneideri]
swissprot
ID Q9LT31
description Vacuolar protein sorting-associated protein 9A OS=Arabidopsis thaliana GN=VPS9A PE=1 SV=1
trembl
ID U5FGY6
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0019s09420g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36516: 160142-161827 , PASA_asmbl_36517: 160739-160863
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000351_140 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 9A-like isoform X3 [Pyrus x bretschneideri]
2 Hb_003058_110 0.0882550149 - - PREDICTED: alpha-mannosidase isoform X2 [Populus euphratica]
3 Hb_008554_120 0.0895688541 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
4 Hb_001102_080 0.094133781 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
5 Hb_018790_070 0.095683303 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
6 Hb_000207_130 0.0964170437 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
7 Hb_000270_460 0.0967711706 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
8 Hb_000771_180 0.0969003509 - - polypyrimidine tract binding protein, putative [Ricinus communis]
9 Hb_140049_030 0.1020315656 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
10 Hb_000395_020 0.1028334866 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
11 Hb_001486_160 0.1033749342 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
12 Hb_050847_020 0.1042503757 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_006355_010 0.104795276 - - PREDICTED: protein NLRC3 [Jatropha curcas]
14 Hb_001953_150 0.1050186601 - - PREDICTED: protein DEK isoform X2 [Jatropha curcas]
15 Hb_001545_200 0.1053711416 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
16 Hb_000011_360 0.1068065623 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Fragaria vesca subsp. vesca]
17 Hb_138842_010 0.106934918 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
18 Hb_032208_040 0.1070972217 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
19 Hb_000700_140 0.1078061944 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
20 Hb_032278_020 0.1084730043 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000351_140 Hb_000351_140 Hb_003058_110 Hb_003058_110 Hb_000351_140--Hb_003058_110 Hb_008554_120 Hb_008554_120 Hb_000351_140--Hb_008554_120 Hb_001102_080 Hb_001102_080 Hb_000351_140--Hb_001102_080 Hb_018790_070 Hb_018790_070 Hb_000351_140--Hb_018790_070 Hb_000207_130 Hb_000207_130 Hb_000351_140--Hb_000207_130 Hb_000270_460 Hb_000270_460 Hb_000351_140--Hb_000270_460 Hb_003058_110--Hb_000207_130 Hb_007632_110 Hb_007632_110 Hb_003058_110--Hb_007632_110 Hb_002007_350 Hb_002007_350 Hb_003058_110--Hb_002007_350 Hb_001486_080 Hb_001486_080 Hb_003058_110--Hb_001486_080 Hb_016461_010 Hb_016461_010 Hb_003058_110--Hb_016461_010 Hb_002301_220 Hb_002301_220 Hb_008554_120--Hb_002301_220 Hb_102129_070 Hb_102129_070 Hb_008554_120--Hb_102129_070 Hb_007982_070 Hb_007982_070 Hb_008554_120--Hb_007982_070 Hb_140049_030 Hb_140049_030 Hb_008554_120--Hb_140049_030 Hb_007229_040 Hb_007229_040 Hb_008554_120--Hb_007229_040 Hb_000771_180 Hb_000771_180 Hb_008554_120--Hb_000771_180 Hb_000480_010 Hb_000480_010 Hb_001102_080--Hb_000480_010 Hb_002888_070 Hb_002888_070 Hb_001102_080--Hb_002888_070 Hb_007044_040 Hb_007044_040 Hb_001102_080--Hb_007044_040 Hb_000868_060 Hb_000868_060 Hb_001102_080--Hb_000868_060 Hb_001102_080--Hb_000270_460 Hb_001102_080--Hb_018790_070 Hb_002942_050 Hb_002942_050 Hb_018790_070--Hb_002942_050 Hb_000392_050 Hb_000392_050 Hb_018790_070--Hb_000392_050 Hb_002157_260 Hb_002157_260 Hb_018790_070--Hb_002157_260 Hb_000395_020 Hb_000395_020 Hb_018790_070--Hb_000395_020 Hb_018790_070--Hb_000480_010 Hb_004055_150 Hb_004055_150 Hb_000207_130--Hb_004055_150 Hb_006620_020 Hb_006620_020 Hb_000207_130--Hb_006620_020 Hb_000853_230 Hb_000853_230 Hb_000207_130--Hb_000853_230 Hb_032208_040 Hb_032208_040 Hb_000207_130--Hb_032208_040 Hb_106552_050 Hb_106552_050 Hb_000207_130--Hb_106552_050 Hb_002078_020 Hb_002078_020 Hb_000207_130--Hb_002078_020 Hb_000270_460--Hb_007982_070 Hb_000300_360 Hb_000300_360 Hb_000270_460--Hb_000300_360 Hb_001143_180 Hb_001143_180 Hb_000270_460--Hb_001143_180 Hb_002045_150 Hb_002045_150 Hb_000270_460--Hb_002045_150 Hb_007558_120 Hb_007558_120 Hb_000270_460--Hb_007558_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.8487 3.96102 5.52346 2.42229 6.97432 6.0657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.14307 3.0657 3.98037 6.56636 2.04351

CAGE analysis